Sturnus vulgaris (common starling): 106861317
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Entry
106861317 CDS
T08833
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106861317 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
svg01009
]
106861317 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
svg04515
]
106861317 (PCDH1)
Protein phosphatases and associated proteins [BR:
svg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106861317 (PCDH1)
Cell adhesion molecules [BR:
svg04515
]
Cadherins
Protocadherins
106861317 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
106861317
NCBI-ProteinID:
XP_014745101
LinkDB
All DBs
Position
Unknown
AA seq
1225 aa
AA seq
DB search
METPRDQSAGARHGAQRRHHPTPLQRRMNPLASCLGLWLLCQLPALASGTRVIYKVQEEQ
PPNSLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHLLP
GDPCYLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGSNAEIDYSFHQASDMVRQLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTD
PSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDN
DPKFMLNGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KGKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSAQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggagacgccgcgggaccagagcgcaggggctcggcacggagcgcagcgccggcaccat
ccaactcccctgcagcgcaggatgaacccgctggcatcctgcctgggcttgtggctcctc
tgccagctccctgccctggcctcggggacacgtgtgatctacaaagtgcaggaggagcaa
ccccccaacagcctcatagggagcctggcctccgactacggcttaccagacatggggcac
ctctacaagctggaagtgggggccccgtacctccgtgtggatggcaagaccggggacatc
tacaccacagagacctccatcgaccgggagaacctgcgggagtgccagcacctcctgccc
ggagacccctgctacctggagttcgaggtgtccatcacgaacctgaacgccaacagcagc
ccacgcctgctcgaggggcagatcgaggtgctcgatatcaatgacaacacccccaacttc
gcctcgcccgtcctcaccctctccatccccgaaaacaccaacatcgggacgctcttcccc
atccccctggccatggaccgggactcgggccccaacggcgttgcctcctacgagctgatg
gcaggtccggaggcacaggagctctttgggctgcaggtggccgaggaccaggatgagaag
cagcctcagctgatcgtcatgggcaacctggaccgggagcagtgggactcctacgatctg
accatcaaggtgcaggatggggggaaccccccgcgggcgagcagtgccctgctccgcatc
accatcctggacatgaacgacaacgcgcccaagttcgagaaggccctgtacgaggcagag
ctgtccgaaaacagccctgtgggccactctgtcctccaggtgaaagccaacgattcggac
cagggctccaacgccgagatcgactactccttccaccaggcctcggacatggtgcggcag
ctgctgcgcctggaccgcgccacggggctcatcaccgtgcagggccccatcgaccgcgag
gacatcggcaccctcaagttctccgtcatggccaaggacaagggcgccaaccccaagagc
gcccgcacgcaggtggtggtcaccatcaaggacatgaatgacaacgcgccctccatagag
atccgcggtatagggttggtcacccaccaggatggcatggccaacatctcggaggacgtg
ccagtagagacagcagtggctctggtgcaggtgtccgaccgagatgagggtgaaaacgcc
gtggtgacctgcgtggtggccggtgacgtcccgttccagctgcgccaggccagcgagacg
gggagcgacagcaagaagaaatatttcctgcagaccaccacgccgttggactacgagtca
gtgaaggagtacacgattgagatcgtggccgtggactcggggaacccgccgctctccagc
accaactccttgaaggtgcaggtgatggacgtcaatgacaacgcccctgtgttcagccag
agcttcactgaggttgccttccctgagaacaacgagcccgatgagctggtcatggaggtg
agtgccacggacgctgacagcggctccaacgccaagctggtttattccctggtgacagac
ccctcctccaagggctccttcaccattgaccccgactccggggagatccgggtgaaggcg
gtgctggaccgagagcagcgggaacgctacgagttcttggtggtggcggaagataagggc
agccccagcaagcagggcacggcgtctgtggccatcaatgtcatggacaggaatgacaat
gaccccaagttcatgctgaatggctacaacttctcggtgatggagaacatgccgcccctc
agccccgtgggcatggtgacggtcatcgatgctgacaaaggagaaaatgcccggatccag
ctgtcggtggagcaagacaacggggattttgtcatccaaaatggcactggcaccatcctt
tccagcatctcttttgaccgggagcagcagagcacctacaccttccgactcaaggcggtg
gacggtggggatccccccaggtctgcctacgtgggagtgaccatcaacgtcttggatgag
aatgacaacgcccccttcatcacctccccctccaatgccacctacaagcacatcctgccc
cacaccagccccggccagcaggtgagcaaggtcaaggcagaggacatcgactcgggcatc
aacgccgagctcatctacagcatcacgggaggaaaccccttcgagctcttccagatctcc
ccgcagagcggggacatcaccctggagaaggagatcctgcgcaagcaccacggcctgcac
cgcctggtcgtgcgcgtcaacgacaagggcaagccctcgcggcacggcacggctctggtg
cacttctacgtcaacgagacgctggccaaccgcacgctgctggacacgctggtgggccac
agcctggacaccccgctggacatcgacatcgccggcgaccccgagtacgagcgcagcaag
cagcgcagcaacatcctcttcggggtcatcgccggcatcgtggccgtcaccctggtcatc
gtgctggtggtcctggtgcgctactgccggcagcgcgaggccaagagcggctaccaggcg
ggcaagaaggagaccaaggacctgtacgcgcccaagcaggccagcaagagcgggaagagc
aagggcaaggtgaagaagagcaagtctcccaagccacccaagcccacggaggatgaggag
gagacgggcctgcagaaatcgctcaagttcaacctcatgaacgactccgtcagcgacagc
ccccggatccacctgcccctgaactaccctccgggcagcccggacctgggccgccactac
cgctccaactcgccgctgccctccatccagctgcagcctcagtcaccctctgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcgacgggctccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggacccctcccagcacagctactacgacagcgggctggaggaatccgagaccccc
agcagcaaatcttcatcagggccccgcatcgggcccctggccctgcccgaggaccactac
gagcgcaccacgcccgatggcagcatcggggagatggagcaccccgagaacgatctccgg
cctctgcccgatgtagccatgactgggacctgcacccgggagtgcacagagttcggccac
tccgacacgtgctggatgcctggccagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaacggc
agccccagactgtcggaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcggctcagaccaccaag
agggagatctacctgtga
DBGET
integrated database retrieval system
