Sturnus vulgaris (common starling): 106862894
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Entry
106862894 CDS
T08833
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
106862894 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svg04121
]
106862894 (SLX4)
03400 DNA repair and recombination proteins [BR:
svg03400
]
106862894 (SLX4)
Ubiquitin system [BR:
svg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
106862894 (SLX4)
DNA repair and recombination proteins [BR:
svg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106862894 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
B129_C2H2-zf
zf-C2H2_jaz
zf-C2H2_6
Zf-C2H2_ZNF451_C
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
106862894
NCBI-ProteinID:
XP_014747616
LinkDB
All DBs
Position
Unknown
AA seq
1848 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKNGDAEATKRVQNRPKSTTTRSKLRRGKAAAKSQTHHHLP
VVKETNFTQDLSPKKQTLLHEEDGDAAACSGETAQGDGARSPLPASQLSTGTPECSQRSL
TVNPVSGCSQTTLPVLPATPPGSCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGSV
LKAAASGDLPARSQEQNPPEDDSHHLPAVEHDTALALALQQESKEEALASLEDAGLFFCQ
ICQKDLTAMNTLRREQHVNRCLDEMEETQMSSSSKPVVPECPICGKQFQTLQSRVSHLKR
CAVEMEVPPNLLLQAVQLQVATLGDAALQCPSNQPSRAKRKGPSNEDSRKTQKRAKMEPK
DEDLQVAMAMSRSLLEQEKQEQAKSVTNVKAVAAFPIKWKPGSEKKRRRKGASAPPPLLL
QDPEKAQKRIQERVALMLTEEVEFPPTPQLPISRILEDESGKATWLLPLCKAKECFLWKI
SALTGPCDPESFYTAALTPPIVPWKPEQNKPENLQPSVGFHQPEVPQQTQPDLSSQEPTC
TKVGGQTSDEFKPGPEGDGQLLSPSQKDIQTLQDLVELAREGLTLTQWNLDTGHVQAAEQ
PGEELTPSDPPCSGFVPPSKKKSLLRSSSKRSSLQLLAQDFSAMVNNPHLSDVQFQVDSG
DVLYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPAQRVLLSDVSAEAVAAFLRYLYAAD
TNFPAGLQPQLQALAARFGMRELMAECENNTGESQVSSGVDSEDDIISVRGDEDCEDRDE
NFQDLLKSVWVGEDEEEVAMLSPECQKEDDSEVGEQELEEIYEFAATQRKMAQGEREMSE
GTHCSICSDTEAIQGTKQQTEQEEVKRPESASVSSSLKDLRDGNGVDRSKCDLSAQEGKM
QNINRCKSMNDPQTTIVPHHSEPQKWDGTSHGANEGGAVGGCEDVKDSRSSQVSHDKADH
CEEHFPGFQGDTDINDSYERLFSASQGDHCEPSPVKEVTKESGKSPGEKHVGHNDSLLFS
KSQKDCSPCKNGFCGSPTSEPYVSLFPAPGTSPASPKSEGRFAREHVSTPKQNKKEKSFP
SYEIHSQKARELAAASRNEITVSPAELPHSESNKHTHVPVLSSPGRTQDAAAQGIKEGDV
IVLSSSDDEMELQQDKKLPESDSALKKMEIPVHLKCTDMKQGPEGPKSDPNSSDPETEQR
SARVSCDSTDTVCVSGDVKVSPEFPLNRQTGACTGIKESPNLSPGKRLSNEMSPSTDSSW
LVPGTPVLSKSRSFSTQTEVTSIDSLKGPGSKLSTKNLAAGNSNHEMTDNLIKVHKTTLS
DQHLPMENSASGRSPPSSPAAESFSKNPLPVSPVDPVFLSPGHTSTESKRANISDLPTVV
PPCQEQPIENNISVVELEDSDREVSLPSLGSSVLLCEEPPIPVDDCWHGEYLSPAKGDGH
CCGQVSTASSPSPGSWQEQGESPVQVSGIKGSTPLQGTPAGRRTTLHCPEKSPIEPCSSV
GSRASYLDSKLWDDWNGEEKEDELPEILPLSQRLAAAAEAGRTDPVKTPELSCQENNRAP
STPVTPMPAYSMMETPQLKKELSRFGVRALPKRQMVWKLKEIFQYTHRDGDSDFEDEIPY
SQPLPRKSPAKRPRQPKAGGAAGRNRASAPRAVGKRKQLAKASAVLPRDEADDAGCAKDR
TKVTHHPEGAKEQERPTVSLAADGEELPASQESAGSSVNGSDISFGSQSSFVNGFETCAF
TSEEEEEEFPASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPIELADLHAELKQNGIK
ISKAKLLDFLDSQCITTTMARARKEQEQKRKENKKQRRRYRVKPTHTR
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaatggggatgctgaggcaacaaagagggttcagaataggccaaagagcaccacaaca
cgaagcaaactaagaagaggcaaagctgctgctaagagccaaacccatcatcacttaccg
gtagtgaaggaaacaaactttactcaagatctgagtccaaagaagcaaacgttgttgcac
gaagaagatggtgatgctgcagcctgtagtggtgagactgcacagggggatggagcaaga
agccctctccctgccagccagctgagtacagggactcctgagtgtagccagaggtctctg
acagtaaatcctgtgagtggctgttcccagaccaccttacccgtccttcctgctactcct
ccaggaagctgctcctcacccacccccaaggtgcgggtggcagagctggtggtggagaga
atgcagcagttcaagagggtggcacccgagcagctgaagcacagctcagatgggagcgtg
ctaaaggctgcagccagtggggatttgcctgccaggagccaggagcagaaccctcctgag
gatgattcccaccatctcccagccgtggaacacgacactgctctggctttggctcttcag
caggaatccaaggaggaagccctggcaagcctggaggatgcaggcttgttcttctgtcag
atctgccagaaagatctcacagccatgaacaccctgcgacgagagcagcacgtcaacagg
tgtctggatgagatggaagaaacacagatgtcatcctccagcaagccagtggtccctgaa
tgtcccatctgtgggaagcagttccaaaccctgcagagccgagtcagtcacctgaaacgc
tgtgctgtggagatggaggtgcctcctaatctgctgcttcaggcagtgcagttgcaggtg
gccacacttggtgatgcagctcttcagtgtcccagcaatcagcccagcagggcaaagagg
aaaggcccctccaacgaggactcgaggaaaacacagaagagggccaaaatggagcctaag
gatgaagatttgcaagttgccatggcaatgtcacgctctctgttggagcaagaaaagcag
gaacaagcaaaatcagttacaaatgtgaaagcagtggctgctttcccaatcaaatggaag
ccaggatcagagaaaaagaggcgtaggaaaggtgccagtgcccctccacctctgctgctc
caggaccctgagaaggcccagaagaggatccaggagcgagtagctctgatgctgacagaa
gaggtggaattccctcccacccctcagctgcccattagcaggattctggaggatgaatct
ggaaaagcaacctggctgctgccattgtgtaaagccaaggaatgctttttatggaagatc
agtgctctgacaggaccctgtgaccctgaatcattctacactgcagccttaacacctcca
attgtaccctggaagcctgagcagaataagccagagaaccttcagccatcggtgggattt
catcagccagaagtaccccagcaaactcagcctgacctcagttctcaggaacccacttgc
acaaaggttggaggccaaacttctgatgaattcaagccaggccctgaaggagatgggcag
cttttatccccgagccagaaggacattcagaccctacaggacctggtggagttggccagg
gaaggactcacccttactcagtggaaccttgacactggccatgtccaggcagcagagcag
ccaggagaagaactgactcccagtgatcctccatgtagtggctttgtgcccccatccaag
aagaagagcctcctcaggagcagcagtaaaagatcctctctccagctgctggctcaagat
ttcagtgccatggtgaacaacccccacctgagtgatgtccagttccaggtggacagtggg
gacgtgctctacgctcacctgttcgtgttgtacgcgcggtgtccggcggcggctcaggcc
gtgcacagcgaggggctggtggtggaggaggatggggctgcgccggcgcagcgcgtgctg
ctgagtgatgtgtcagctgaggctgtggctgccttcctgcggtacctctatgctgctgac
accaacttccctgctgggctgcagccccagctgcaggctctggctgccaggtttggtatg
agagaactaatggcagagtgtgaaaacaacactggagagagccaggtgtcttctggagtg
gattcagaagacgatatcatctctgtcaggggtgatgaagattgtgaggacagagatgag
aacttccaagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagtagcaatg
ctgagccctgagtgccagaaggaggatgacagtgaggtgggagaacaagagctggaagaa
atctatgagtttgctgcaactcagagaaagatggctcagggtgaaagagagatgagcgag
ggcacacactgcagcatctgcagtgacactgaggccatccaaggtacaaaacagcaaact
gagcaggaagaggtaaagagacctgaatctgcttcagtaagcagcagcctcaaagatctg
agggatggcaacggtgtggacagatctaagtgtgatttgtctgcacaagaagggaagatg
cagaatataaataggtgcaagagcatgaatgatccacagaccactattgtgcctcaccac
agtgaacctcagaaatgggatggaacatcccatggtgctaatgaaggaggggctgttggg
ggatgtgaggatgtgaaggattccaggtcatctcaggtctcacatgacaaggcagatcac
tgtgaagagcattttcctggtttccagggtgatactgatataaacgatagctatgaacgt
ttgttttctgcctctcagggagatcactgtgagccttccccagtgaaagaagttaccaaa
gaatcaggaaagtcccctggtgaaaaacatgttggtcataatgattcacttctgttcagc
aagtcacaaaaagactgctctccatgtaagaatggattttgtgggagtccaacttctgag
ccttatgtgtccctttttcctgctcctggcacttcacctgcatctccaaaatcagaggga
aggtttgccagggaacatgtgtcaacaccaaagcaaaacaaaaaggaaaaatcattccca
tcttacgaaatacactcccagaaagccagggagctggctgctgcatcaagaaatgagatc
acagtttctccagcagagcttcctcatagtgaatcaaacaagcacacacatgtcccagtg
ttgtcatcaccaggcaggactcaggatgctgcagctcaggggatcaaggagggtgatgtt
attgttttatcttcttctgatgatgaaatggagttacaacaagacaagaagttgccagag
tctgactctgctctgaagaaaatggaaatccctgtgcacctgaagtgtacagacatgaaa
caaggccctgagggaccaaaatctgaccctaactcatcagatcctgaaacagagcagaga
tcagctcgggtctcatgtgacagtacagacacagtgtgtgtaagtggtgatgtaaaggtg
tcccctgaatttcctctcaacagacaaacaggtgcttgcacagggatcaaagagagtcca
aacctgagccctgggaagaggctcagtaatgaaatgtctccaagcacagacagctcctgg
cttgtgccaggaacaccagttctgagcaaaagcagaagcttctcaacacagactgaggtc
acaagtattgattctctaaagggtccaggatctaaactcagcacaaagaacttagcagca
ggtaatagtaatcacgaaatgactgataatttaataaaagttcataaaacaacattgtca
gaccaacatttgccgatggagaactcagccagtggaaggagcccacccagcagcccagca
gcagaatccttttccaagaacccccttccagtttctccagtggatccagttttcctctcc
cctggccacaccagcacggaaagcaaacgtgccaatatctcagatttacccacagtggtg
cctccgtgccaggagcagccaatagaaaataacatcagtgtggttgagctggaggacagt
gacagggaagtaagtctgccttctctgggtagcagtgtcctgctgtgtgaggagccccca
atccctgttgatgactgctggcacggtgagtatctgtcaccagccaaaggtgatggtcac
tgctgcggccaggtcagcacagccagcagccccagccctggctcttggcaggagcaggga
gagagcccagtccaggtgtcaggaattaagggcagcacccctctccaaggaactcctgct
ggcaggagaacaactctgcactgccctgagaagagccctattgagccatgttcatcagtg
ggcagcagggccagttacctggactccaaactctgggatgactggaatggagaagagaag
gaagatgaacttccagagattcttcctctgtctcagaggttggcagctgcagcagaggcc
ggtcggacagatcctgtcaagactcctgaactttcctgtcaggagaacaacagggcccct
agcactccagtgacacccatgccagcttactccatgatggagaccccacagctgaagaag
gagctgagcagattcggtgtccgtgctctcccaaaacgccagatggtgtggaagctgaag
gagatattccagtacactcacagggatggggactctgactttgaggatgaaatcccctat
tcccagcccctcccacggaagtccccggccaagcggccgaggcagccaaaggcaggcggg
gctgcaggcaggaaccgagccagcgccccgagggctgtgggcaagaggaagcagcttgcc
aaggcttctgcagtgctccctagggatgaggctgatgatgcaggctgtgccaaggacaga
actaaagtgacacatcacccagaaggagctaaagagcaggaaagaccgactgtgtccctg
gcagctgatggtgaggagctcccagcatcccaggagtcagcaggttcttcagtgaatgga
agtgacatctcctttggctcacagagttcctttgtgaatggatttgaaacctgtgctttt
acatctgaggaggaggaagaggaatttccagcctctcaagcagcagctcgggaagaggaa
aagctggaggcagtgaggtgctacatccgctcaaacacagccctgtacaacaggattctc
ttctacgagcccatcgagctggctgatctgcacgcagagctcaaacagaatggcattaaa
atttccaaggcaaagctgctggactttctggattctcagtgcattacaactaccatggcc
agagcccggaaagagcaggaacagaaaaggaaggagaacaaaaaacagagaagacgatac
cgagtgaagcccactcatacccgctga
DBGET
integrated database retrieval system
