KEGG   Sturnus vulgaris (common starling): 106863298
Entry
106863298         CDS       T08833                                 
Symbol
COPA
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
svg  Sturnus vulgaris (common starling)
Brite
KEGG Orthology (KO) [BR:svg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:svg04131]
    106863298 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:svg04147]
    106863298 (COPA)
Membrane trafficking [BR:svg04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    106863298 (COPA)
Exosome [BR:svg04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   106863298 (COPA)
  Exosomal proteins of bladder cancer cells
   106863298 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR41 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_RIG_2nd TPR_COPA_B
Other DBs
NCBI-GeneID: 106863298
NCBI-ProteinID: XP_014748199
LinkDB
Position
Unknown
AA seq 1088 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGNSRGKNGN
FGGKRGFGFSQEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVS
ASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAA
FHPSMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKS
IRVWDMSKRXGPHPRAWKFPQFPALQQFLAGHDGGMLVFKLERERPALAVHGNSLFYVKD
RFLRQLDFSSSRDVAVMQLRSGSKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYTIPK
DADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSILIKNLKNEITKKVPVPNCEEIFY
AGTGSLLLREPDGVTLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAILICNRKL
ESLCQIHENIRVKSGAWDESGVFIYTTSNHIKYAVTSGSEGLEKPFLRIGELFLRMEEPL
PRMEEPFPSLFFFGNAPQVLHMVRNAKLVGQSIIAYLQRKGYPEVALHFVKDEKTRFSLA
LECGNIEVTPGGFGVFWGQSLAFLTAATHGLDEEAESLRESFDPEKETIPAVDPEARLLQ
PPAPVLPLDTNWPLLTVSKGFFEGSIAGKGKGGALAADIDMDTVGTEGWGEDAELQLDED
GFVDAGEGFGEEGTGKGQEEGGGWEVEEDLDLPPELDVPAGPAGAAEDGFFVPPTKGTSP
AQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFLQTFSRGRTTFQALPSL
PALYGFPHRNWKEGGLKNALPAVGLKLTDLIQRLQLCYQLTTAGKFEEAVEKFRLILLSV
PLLVVDNKQEIAEAQQLVAICREYIVGLSMEIERKKLPKETLEQQKRICEMAAYFTHSNL
QPVHMILVLRTALNLFFKLKNFKSAATFARRLLELGPKPEVAQQTRKILAACEKNPVDSH
QLNYDQHNPFDICAASFRPIYRGKALERCPLSGACYSPEFRGQICRVTTVTEIGKDVLGL
RISPLQFR
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgctgaccaaattcgagactaaatctgcgcgggtgaaagggctgtcgttccacccgaag
cgcccctggatcctgaccagcctccacaatggggtgatccagctctgggattatcgcatg
tgcaccctcatcgacaaattcgacgagcacgatggtaattccaggggaaaaaatgggaat
ttcgggggaaaacgggggtttggattttcccaggaatatccctggatcctgagtgcctct
gatgaccaaaccatccgtgtgtggaactggcagtccaggacctgtgtctgtgtcctgaca
ggacacaaccattacgtgatgtgtgctcagttccaccccagcgaggacctggtggtgtcg
gccagcctggaccagactgtcagggtgtgggacatctccgggctcaggaagaagaatctc
tcccccggggccgtggaatccgacgtgcgcggcatcaccggcgtggatctgtttggcacc
accgacgccgtggtcaaacacgtgctggagggccatgacaggggggtgaactgggctgcc
ttccacccctccatgcctctcatcgtgtccggcgccgacgatcgccaggtgaagatctgg
aggatgaatgaatccaaggcctgggaggtggacacgtgccgtggccactacaacaacgtt
tcctgcgccgtgttccacccccgccaggagctgatcctcagcaactccgaggacaagagc
atccgagtgtgggacatgtccaagaggtgagggccacaccccagggcctggaaattccca
caattcccagcattgcagcaattcctggcaggccatgatgggggcatgctggtgttcaag
ctggagcgggagcggccggcgctggccgtgcacgggaattcgctgttctacgtcaaggat
cgattcctgcggcagctcgacttcagcagctcccgggacgtggccgtgatgcagctccgc
agtggttccaagttcccggtgttcagcatgtcctacaacccagctgagaacgctgtgctg
ctctgcactcgagccagcaacctggagaacagcacctacgacctgtacaccatccccaag
gatgcagattcccaaaatcccgatgctcccgaggggaagcgctcctcggggctcacggcc
gtgtgggtggcgcggaatcgattcgctgtcctggacaggatgcactcgatcctgatcaag
aacctgaagaacgagatcaccaagaaggttccggtccccaactgcgaggagattttctac
gcgggcaccgggagcctcctgctgcgggagcccgacggtgtcacgctcttcgacgtgcag
cagaaacggactttggcctcggtgaagatttccaaggtgaaatatgtgatctggtcagct
gacatgtcccacgtggccctgctggccaagcacgccatcctgatctgtaaccggaagctg
gagtcgctgtgccagatccacgagaacatccgggtgaagagcggggcctgggacgagagc
ggcgtcttcatctacaccacgtccaaccacatcaaatacgccgtcacctcggggtcagaa
gggctggaaaagcctttcctaaggataggagagcttttcctgaggatggaagagcctctc
cccaggatggaggagcctttcccgagtttgtttttttttgggaatgcccctcaggtgctg
cacatggtgaggaacgccaagctggtggggcagtccatcatcgcctacctgcagcgcaag
ggctaccccgaggtggcgctgcacttcgtcaaggacgagaaaacgcgcttcagcctggcc
ctggagtgcggcaacatcgaggtgacccccgggggcttcggggtgttctgggggcagtcc
ctggcgttcctgacggccgccacgcacgggctggacgaggaggccgagagcctgcgggaa
tccttcgatcctgagaaggaaacgatcccggccgtggatcccgaggcgcggctgctgcag
ccgccggccccggtgctgcccctggacaccaactggcccctcctgaccgtgtccaaagga
ttcttcgagggctccatcgccgggaaagggaaaggaggagccctggccgccgacatcgac
atggacaccgtgggcaccgagggctggggcgaggacgccgagctgcagctggatgaagac
ggattcgtggacgccggggaaggattcggagaggaaggaacgggaaaagggcaggaggaa
ggaggaggatgggaagtggaggaagatttggatcttccccccgagctggatgtccccgcc
ggccctgcgggagcggctgaggacgggttctttgtgccccccaccaaaggcaccagccca
gcccaggtgtggtgcaacaattcccagctccccgtggatcacatcctggcaggatccttc
gagacagccatgaggctgctccatgaccaggtgggagtgaccaactttggcccctacaag
cagctcttcctgcagaccttttcccgaggccggacgacattccaggctcttcccagcctc
cctgccctctatggattcccacaccgcaactggaaggagggcggcctgaagaatgcgctg
ccggccgtggggctgaagctgacggatctgatccagcggctgcagctctgctaccaactc
accacggccggcaaattcgaggaggccgtggagaaattccggctcatcctgctcagcgtg
cccctgctggtggtggacaacaagcaggagatcgccgaggctcagcagctggtcgccatt
tgccgggaatacatcgtgggattgtccatggagatcgagaggaagaaactgcccaaggaa
acgctggagcagcagaagagaatctgtgagatggccgcctacttcacacactccaacctg
cagcccgtgcacatgatcctggtgctccgcaccgccctcaacctcttcttcaaactcaag
aacttcaaaagcgccgccaccttcgcccggcgcctgctcgagctcgggcccaagcccgag
gtggcccagcagacacggaagatcctggcggcgtgcgagaagaaccccgtggacagccac
cagctcaactacgaccagcacaaccccttcgacatctgcgccgcctccttccgccccatc
taccgcggcaaggccctggagcgctgccccctcagcggcgcctgctacagccccgagttc
cggggccagatctgccgcgtcaccacggtgacagagatcggcaaggacgtgctggggctg
cgcatcagccccctgcagttccgctag

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