Sturnus vulgaris (common starling): 106864370
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Entry
106864370 CDS
T08833
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03013
Nucleocytoplasmic transport
svg03015
mRNA surveillance pathway
svg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106864370
09122 Translation
03013 Nucleocytoplasmic transport
106864370
03015 mRNA surveillance pathway
106864370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106864370
03041 Spliceosome [BR:
svg03041
]
106864370
Enzymes [BR:
svg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106864370
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106864370
Spliceosome [BR:
svg03041
]
Complex C
Other components
EJC/TREX
106864370
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106864370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
CMS1
Helicase_C
Motif
Other DBs
NCBI-GeneID:
106864370
NCBI-ProteinID:
XP_014749477
LinkDB
All DBs
Position
Unknown
AA seq
248 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGADGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPHGMVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS
LNLKHIKHFILDECDKMLEQLGGSGVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE
ERLSRYQPGRGLGTDCAAGRGGEEERGGEGAAGLGEIKAIFVAEMAPWFLWGRQGARGAG
GGASAAVT
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgttgacaacgagctgctggactacgaggatgacgaggtggagaac
gcggcgggcgccgacggggccgaggcgccccccaagaaggacgtgaagggctcgtacgtg
tccatccacagctcgggcttccgggacttcctgctcaaacccgagctgctgcgggccatc
gtggactgcggcttcgagcacccctccgaagtccagcacgagtgcatcccccatgggatg
gtggcagtgtttttcgggggcctgtccatcaagaaggacgaggaggtgctcaagaagaat
tgtccccacatcgtggtggggaccccgggccggatcctggcgctggcccggaacaaaagc
ctgaacctcaaacacatcaaacatttcatcctggacgagtgcgacaaaatgctcgagcag
ctcggtgggtcgggggttgtgatttttgtcaagtccgttcagcgctgcatcgccctggcc
cagctgctcgtggagcaaaacttcccggccatcgccatccacaggggcatgccccaggag
gagaggctgtcccggtaccaacccggacgaggcctcggcaccgactgcgccgccggacgg
ggaggggaggaggagaggggaggggagggcgccgcgggtttgggtgaaataaaagcgatt
tttgtggcagaaatggcgccgtggtttctttggggccgccagggggcgcgcggggccggg
ggcggggccagcgcggccgtcacgtga
DBGET
integrated database retrieval system
