Sturnus vulgaris (common starling): 106865302 Help Entry 106865302         CDS       T08833                                  Symbol HTT Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism svg  Sturnus vulgaris (common starling) Brite KEGG Orthology (KO) [BR:svg00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:svg03019]     106865302 (HTT)    04131 Membrane trafficking [BR:svg04131]     106865302 (HTT)    03029 Mitochondrial biogenesis [BR:svg03029]     106865302 (HTT) Messenger RNA biogenesis [BR:svg03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      106865302 (HTT) Membrane trafficking [BR:svg04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     106865302 (HTT) Mitochondrial biogenesis [BR:svg03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     106865302 (HTT) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_2 HEAT_EF3_N Rad26-like_helical_rpts Motif Other DBs NCBI-GeneID:  106865302 NCBI-ProteinID:  XP_014750764 LinkDB All DBs Position Unknown AA seq 3079 aa AA seqDB search MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR SRSGSIVELIGKVLLGEEEGLDDDSETRSDVSTASFTASVKGEITSELASSSGVSTAGSV GSSAADPTGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGEDDEVLSRSSSQISAVQS DATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGAEGQYSGMQIGQLQDEE DETANVLQDDSSESFRNSSLALQQSHLLKTTSHSRQPSDSSVDRFTSKEDAADAGDHENK PSRVKGDIGHYTDTDCAPLVHCVRLLSASFLLTGDKGALVPDRDVRVSVKALAVSCVGAA VALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIRGATAILCGTIVNSILI KSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCSSS YSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVNFLEGKTESLHRGIHHYTGLL KLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQADPVVAVARDQSSVY LKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRVIAAISHALTISTTRAL TFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIGMAGLVLSLLSSAWFPL DLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEPWPALADRALVTLVEQL FSHLLKVINICAHVMDDVAPGPTVKAALPSLTNPPSLSPIRRKGKEREPVEQAAVPMSPK KSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKATHANYKVTLDLQNTNE KFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFG TNLASQYDGLSSNPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQA EQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLFEPLVIKALKQYTTTTS VQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFL VLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAG KELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQ QMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASVSTVQLWISGILAILR VLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNVSTPEDHTEVKQVKYPPEETF SRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAAT RLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVNYTNYNWWSEVHQTPKR HSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLI VNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLAAPTTLKKTLQCLEGI HLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQNSIAQLPVEELDRIQ EYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGEDQPALENVVLDKDWY VSLVRSQCYIKSDAALLEGAELVNRIPQPDLNSFMTSKEFNLSLLAPCLSLGMNEISREQ KSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKKLSDIFGDEVMYQSMMT LCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHLVHDQTPLSVDLQAGLD CCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGNQLLSPERKNTSKPLSE GEIDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHQRNGSIPAFLTPVLKNIIISLARLP LVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWISRTQ FEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITSLVLSAMTIPVAGNPA VSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIATHHLYQAWDPVPSL SPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNITPLREEEWGEDEEDE NDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSNPSKRTPVILISEVVRS LLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATCKAAAVLGMDKAVAEPV SRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISEYLLSNLRGVAHCVNI HNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDESTPSIIYHCVLRGLE RLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKISPSRIPDANP GAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGEFLS NQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSA STSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEELDRRAFQSVFEVVASPG TPYHRLLTCLQNVHKVTAC NT seq 9240 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag cagggcccggctgccctccccgaggagccgctgcagagaccaaagaaagaactttcagct accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaacatagttgctcagtca ctaaggaattccccagaatttcagaaactactgggcattgctatggagctctttctcctc tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt attaaagctttgatggattccaatcttcccaggttacagttggaactgtataaagagatt aaaaagaatggtgcttcaagaagtctgcgggctgcactctggagatttgctgagcttgct catctagttcggcctcagaagtgcaggccgtatttggtgaaccttttgccctgtctaaca cggataagtaagagacccgaggaatcggtacaagagacgctggctgcggcaatacccaaa atcatggcagccttcggcaattttgcaaacgacaatgagattaaggttttgttgaaggct ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca gtaagcatctgtcaacattcacgaagaacacagtatttttatgcctggttattgaatgtg cttttaggcttgttggttcctgtagaagatgatcgacctactcttttaattctgggtgtt ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg aagggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactg atacaggtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgact ggagctttagaattgctccagcagctctttaggacacccccccctgaactgctccatgcc ctgaccgcctgtgggggcattgctcaggtcagtgtatccaaagatgagcctgccagcagg agccgcagtgggagcatagtggaacttataggtaaagtacttcttggtgaagaagaaggc ttggatgatgattctgaaacccgatctgatgtcagcactgcatcatttacagcttctgtg aagggtgagataaccagtgaactggcttcttcatcaggtgtgtcaacagctgggtcggtg gggagctctgctgctgatcccacgggacacgacatcatcacggagcagccccgttcccag catacgctgcagtcagactctgtggacctggcgagctgtgacctgacgagtacagctact gaaggggaggatgatgaagtgctcagtcgaagctccagccagatcagtgctgtccagtca gatgccactatggatttgaatgatggcacacaggcttcctcaccaattagtgatagctct cagactactacagaaggtccagactctgctgtaaccccttcggacagctctgaaattgtt ttggagggtgctgaaggacagtattctggaatgcaaattgggcagctacaggatgaggaa gatgaaactgcaaatgttctccaagatgattcatcagagtccttcagaaactcttctctt gctcttcagcagtctcacctgctgaaaaccacgagccatagcaggcagccctctgatagc agtgtggatcgtttcacatcaaaagaagatgcagcagatgctggtgatcacgagaacaag ccctccagggtgaagggggacatcgggcactatactgacacagactgtgctcctttggtg cactgtgtccggctgctctcagcttccttcctgctcactggggacaaaggagctttagtt cctgatagagatgtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagct gttgcacttcaccctgagtctttcttcagcaaactgtataaaacacctctggaggcaatg ggagaagagtatgaggagcaatatgtatcggacattctgaactatattgaccatggagat ccccagattagaggagctactgccattctctgtggaacaattgtcaactccattctaatc aaatcccgctttgatgtggaaaaatggctcataaatgtcagaagctcaacaggaaatctc ttttccttgatagactgcatacctctgttgcagaaaacattgaaagatgagtcctctgtg acatgcaaactggcttgtacagctgtcaggcactgcatcatgagcttatgcagtagcagt tacagtgaactaggtttgcagttgattgtggacctccttactctgaagaacagctcatac tggctggtaaggacagaacttctggaaacacttgcagaagtagattttcggctagtcaac ttcttggaaggaaaaactgagagcttgcacagaggaattcatcattacactggtctatta aagcttcaggagagagtactcgaaaatgttgtaataagtctgcttggagatgaagatcca agagtgagacacgtggctgcagcgtcattaatgaggctcgttccaaagctgttttataac tgtgatcaaggacaggctgacccagttgtggcagtagcacgagaccaaagcagtgtctac ctgaaactcctcatgcatgaaacacagcccccatctcacttcgcagtgagcactatcacc agaacatacagaggttacaatatgttgcaaagtccaacagatgtcactatggaaaacaac ctttcaagggttattgcagcaatttcccatgcattgacaatatccactacaagagcactg acgtttggctgctgtgaagctttgtgtcttctctccacaacatttccagtctgcacctgg agtgtgggatggcactgtggtgtttcccagccaagttcttcagatgaagctcagaagggc tgcaccattggtatggctggcttggtcctgtctctcctttcatcagcatggttcccactg gacctctcagcacatcaggatgctttgattttgactggaaacttgcttgcagcaagtgct cccaagtgcttaaagaacccctggagtgctgaagaagatgcaaaccaaggtgctgcaaag caggaggaaccctggccagctctggctgatcgagctcttgtcactttagtagaacagctc ttttcccatctgctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcct ggtccgacagtaaaggcagcattaccttctctcacaaacccaccttctcttagtccaatt cggagaaaggggaaagagagggagcctgtggaacaggcagctgtgccaatgagccctaaa aagagtggtgaagcaagtccagcttctaggcaaactgatgctacaggacctgttccaaca agtaaatcatcttcagtagggagcttttatcatcttccatcatacctgaagttatatgat gtcttgaaagcaacccatgctaattataaggttactttggatctccagaacactaatgag aagtttggatgtttcttacggtctgccttagatgttctctctcaaatcttggaacttgct actcttcaggacattggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttc aacagagagccaacaatggcaacagtgtgtgtacagcagttattgaaaacgttgtttggg acaaatctggcgtctcagtacgatggcttgtcatcaaaccccaacaaagctcaaggcaaa gctcagcgcttgggttcctccaatctgaggcctggtctctaccactattgcttcatggcc ccgtacacacacttcacacaggcccttgctgatgccagtctgaggaacatggttcaggct gagcaggagcatgatgcctcaggatggtttgatgtgctgcagaaagtttctacacagctg aaaactagcatttccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcac attcgtttatttgaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcg gttcagctgcagagacaagttctagacttgcttgctcaactggttcagctgcgagttaac tactgtcttctggattcagatcaggtgtttattggatttgtgctaaagcagtttgaatac attgaagtgggacaattcagggagtctgaagcaattattcctaatatcttctttttcctg gtgttgctgtcttatgagcgatatcattccaaacaaataattggaattcccaagatcatt cagctgtgtgatggcatcatggccagtgggaggaaagctgttacacatgcaataccagct ctgcaacccattgttcatgatctctttgtgttaagaggaacaaataaagctgatgctgga aaagagctggaaactcagaaggaggttgtagtgtcaatgctgctgagacttatccagtac catcaggtgctagaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagac aaatggaagaggttgtcccggcaaatagctgacatcattctcccaatgcttgcaaaacaa cagatgcatatagactctcatgatgctttgggagtattgaacactttgtttgaaattttg gctccttcatcccttcgccctgtggatatgcttttaaggagcatgtttgttactcctaaa acaatggcatcagtgagcactgtccagctgtggatttctggaattttagctatccttaga gttttgatttcacagtcaacagaagatatcgttctatcccgtatacaagagctttccttc tcgccatatttgatttcatgtcaagcaatcaacagactgagatgtggagaaaacaatgtg tccacaccagaggatcacactgaggtcaaacaggtgaaatacccacctgaagagacattt tccaggtttttactacaactggttggcattctactggaagatattgttaccaagcaatta aaagtggacatgaatgagcaacaacatactttctactgccaggagctgggcacactgctt atgtgcttaatacatatcttcaaatcagggatgtttagaagaatcacagctgcagccacc agactttttacaggagatggatctgatggtagtttctatacacttgaaagtctgagtgac cttgttcagtccatgattcccactcatccttctttagttctcctctggtgtcacatcttg cttcttgtcaattataccaactacaactggtggtcagaagtccatcaaaccccaaagcga cacagcctttctactactaaattgcttagccctcatatatctggagacagtgatgaatcc gacttggaatctaagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcatt ctcttttgtgactatgtttgtcaaaacctacatgattcagaacacctgacctggcttatt gtgaatcacgttcaagacttgattaatctgtcccatgagcctccagtacaagattttatc agtgctgttcacaggaattcagcagccagtggtctcttcatccaggccattcagtcacgg tgtgagaatcttgcagctcccacaaccctgaagaagaccttgcagtgcttggagggcatc cacctgagccagtctggggctgtgctgaccctgtacgtggacaagctgctgtgcactccc ttccgagtgctggctcgcatggtggacaccctggcctgccgccgcgtggaaatgctgctg gcagcaaccctgcagaatagcattgctcagttaccagttgaagaactggatagaattcag gagtaccttcaaaacagtggattagcagcaagacaccaaagactctactcgctcttggat agatttcgtcttatggtagcaccagacacaaccagtccttcacctctggttacctcacac ccactagatggagaagaccaaccagctctggagaatgtagttctagacaaagactggtac gtgtctctagtgcggtcacagtgttacatcaagtctgacgcagcactgctggaaggagca gagctggtaaacagaattcctcagcctgacctgaactccttcatgaccagcaaggaattc aacctaagcttgttagcaccttgtttaagccttggcatgaatgagatctcaagggagcag aagagcagcctctttgaaacagctcggagggtaactctggatcatgtgtcttctgctgta caaaaccttccagccaaccaccaggtttttcagccactattgccaactgagccatcagcc tactggaaaaaactaagcgatatctttggagatgaggtgatgtatcagtctatgatgaca ctttgtcgtgcactggctcagtatttgttgttactctcaaaactaccagctggtcttcgt gttcctcctgacaaagaggatgatatcctgaaattcgtagtgatgtcagtagaggcacta tcatggcatttggtgcatgaccagactccattaagtgtagatcttcaagctggtctggac tgttgctgtctgacactacagcagcctagtctctggaatttgctgtcttctgcagctcat gtgacatatgcttgctccttaattaactgcattagatttatcatagaagcagttgctgtg gaacctggtaatcaacttctgagtcctgaaagaaagaatacatcaaaacctttaagtgag ggggaaattgattcaaatgtacaaaaaacaaaacacattattgcagcatgtgaaatgata gctgagatggtggaatgcctacagactgtcttgtcactggggcaccaaagaaacggcagc atccctgcatttctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcct ctagtgaacagctacaccagagtacctcctttggtctggaaattgggctggtcaccaaag cctttaggtgactttggcacagtttttcctgaaatccctgtagaatttctgcaagaaaag gaaatatttaaggagttcatctatcgcattaatacacttggatggatcagccgtactcag tttgaagagacttgggctactttgcttggtgtgctcgtaactcagcccattgtaatggac caagaggagaaccagcaagaggaagatacagagaggacccaaatcaatgttcttgcagta caagccataacctccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagca gttagctgtttggagcagcagccccgcaacaaagctttaaaagctctggacacaaggttt gggaggaagctaagtgttattaggggaattgttgaacaggaaatccaggcaatggtgtct aagagagataatattgctactcatcacttataccaagcttgggatcctgttccatcactt tctcctgctactacaggtgctcttatcagccatgaaaaactcttactgcagatcaatact gaacgagaaataggagatatggattacaaactgggacaggtctctatacactccatatgg ttaggaaataatatcactcccttgagagaagaagagtggggtgaggatgaagaagatgag aatgatgtacccgctccttcctcaccaccaacctctcctatcaataccagaaaacaccgg gctggtgtagatatccattcttgttctcagttcttgcttgaactttacagtcagtggata ttgccatccaaccccagcaagagaacaccagtcattttgatcagtgaagtggtgcgatca cttctggcagtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaaca ctgacagagttgcgaaaggtgcatccatcagaagatgagattcttgtgcagtatttgata ccagctacttgtaaagctgctgctgttcttggaatggacaaagctgtggctgaaccagta agtcgactgctggaatcaacactaagaagcacccatatgccaagtcggattggagctctg catggaattctttatatcctggagtgtgacttgctcgacgagacagcaaagcaactcatt ccaattatcagcgagtatctgctctccaatctgagaggagtagcacattgtgtgaatatc cataatcaagagcacattttggtaatgtgtgcagctgctttctatttgattgagaattac ccacttgatgtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtg tctggaagtgatgaatcaacaccatccattatttatcactgtgtcctgagaggattggag cgactccttctttcagagcagctttccaggctggacagtgagtcgctggttaaactgagt gttgacagggtgaatgtgcagagcccccacagagcaatggcagccctgggattaatgctg acttgcatgtacacaggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcct ggtgctcctgacagtgaatctgtgattgtcgctatggagcgagtgtctgtcctttttgat aggatcaggaagggatttccttttgaagctcgagtagtggctcggattcttccacagttc cttgatgatttcttccccccacaagatgtaatgaacaaagtcattggagaatttctgtcc aatcaacagccatacccacagttcatggcaacagtagtttataaggtgttccagacactg catagcactgggcaatcctcgatggtccgtgactgggtgatgctctctctctctaatttc acacaaagaacacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgct tccaccagtcaatggatttcagccattcttccacatattatcagcagaatgggaaaatca gagcaagtggatgttaacatcttctgtttggtggccatagacttctaccgacaccagatc gatgaagaattggatcggagagcgttccagtcagtgtttgaggtggtggcatctccagga accccataccatcgcctactgacttgtttgcaaaatgtccacaaggtcacagcatgttga

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