Sturnus vulgaris (common starling): 106865343
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Entry
106865343 CDS
T08833
Symbol
VPS13A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
svg
Sturnus vulgaris (common starling)
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svg04131
]
106865343 (VPS13A)
Membrane trafficking [BR:
svg04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106865343 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
106865343
NCBI-ProteinID:
XP_014724281
LinkDB
All DBs
Position
Unknown
AA seq
3083 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HISQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIED
AKQKIADRDKVKEEKQDTFVEKLVTQVIKNLQLKISNIHIRYEDDITNRDNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFHKLVRLDNLFAYWNVKSEMFYHGGCDESLVNLKQGVA
SHNVIPDGYDFVFRPISAKAKLLMNPRSDVDFSSPKIDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPVHNNAKIWWKYVLDGILEVNVQPKLQMWCLEHISHPRK
REELLRLLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPGVKQDDENSGGWFSWIWSW
SGEKKNENQEVKGSSLEELMTQEEKAKLYAAIGYSETAVDPTLPKSYEAMKFSVNLLSMS
ISIKENKQTPKLIEFALADLSTVFTQRPGAQAIRFETKIASLEVTGVSQEKCTPRLLSSR
TVYSDESTSLLSIMFETNPLDEKADQRIRIESQPLEIVYDAITVNSLVDFFRPPKDVHLE
QLTSATLMKLEEFREKTSTGLLYIIETQKVLDLKINLMASYIIVPQNGFYDHTSNLLLLD
LGSFKMTSKSRSDLSQIKVGQTSIEDIMSRAYDSFDVQLSSMQLLYSKHDENWREARKLK
NSPQCILQPLDVKLEFSRAMVVTDARMPRFKLSGRLPLLSIQISDQKVTSILELIDSIPQ
PESAPATSSPPKMTEAVLSPMLSAPHVSQGVYPVLDLHSLAESESEEEFYDALSSPVEDV
PFFEVPSDSVKQAVSTRRKTLHKQESLKNMTDFQLKFEVAEVLIKLCRLTGDTEMPVLQL
GILGLGTELKMRTFDMTGNAFLREVGLLCPEYIDDNGKPVYIVTTLDNVEDDLLTLEYIK
TDIKGPELKTVYQNVLQKIKVNFSSLDVHLHTEALLNAMNYLNNLLPKQETKVAEEPVHE
KPEEKKDVLKKLTSKKSKYEDVIDLIICADLSCLSIFIREKNHRIAEIHIEGLDSQVIMK
KAATDMTAKLKNIIIVDSDETALYKKALYITGKEVFNFRMVSYVNATDGTAYTNMDVVDN
RIYLTVGCIQVVFVNKFVSSILAFINNFQAAKEALTEATVRTAEKAATGVKGLAERSSRL
ALDINIKAPVVIIPQSAMSANVLVADLGLITVKNQFFIAKTKTRCSVPPVIDSMTVKLSE
LKLYRSYYEQDSLQTEVQLLQPVSLEVAVERNLAAAWYNEVPDIEISGRLKPMNLILSQE
DITTILRTLNENAGEGSGASTALPESKASTSHSSEMHGTSQHSAGVTVVTSAVVELHSPM
KIKTTLKLDFRFDSLTLVLYSPNSKQVNSLDQRDDLLKLAEFKLVLMSAALKMLSDGSMN
ASVKLANCTLDDKRQLIQKATPRMVEMKHGFEKKVMVDVNYKQGRDGTVLDVIVQEIYLC
ASMEFLLTVADIFLKAKAESAAAQRNLKQSLHVKDQASVQPVSTMEMNIVVKNPEIVFVA
DLTRSDAPALVVTTQCEVFIKSSPEKYNMTAAVREIQMKACPFLPEERKENITTVLQPCD
FFFEMKQSGTNPQTADLTIKSLTIEVSPIIINTVITITSALYQTTETTNEEISQIPPDLW
NKKDIKNLKLWFLEETNENEDKNPNTELVPTGESLKINIESVFLTLEAGVGHRTVPMLLA
KSSFVGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEPLEVEKTDLFRPWTLEIKMK
KAKKALFESDDEEEENYKVPEYKTVINVSSKDQLNITLSKLGLQMLSNLGTAFAEAASQT
SDVFKKDRAPFVIINSLGVPITVSPSDSFSVLNVTFGAKIFHLEDKESLNMEFVRTRNES
DQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYKVRHEESGVERSIVSQIDTVE
GSKMITIRSPIQIRNHFSIPLNVFEEGRCLGTASPANEFNIPFSSYRSILSLQPLANENG
VGEYDMCEGITFDEIMKNVDSLLQRKCQSVKSTNQSLVINIVPVKDSLTTSLGAEDEWDF
PYVVHLWPSVLLRNLLPYQITYSVEGNGNKYDTLQEGCSAQIHNAVLDQTKLDLQLLNYL
DQNWRSEYHVKSNLPDISFTTFHCVTELDKTELDIAVHVTYTTGQMIIAIHSPYWMVNKT
GRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQLRVTDSELSDQFSLDTVGSHG
SVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRSTYTLEVAEEGKEKWIPIVLQ
QCIPFWPENDANKLLVRVENSDLPPKKINFDQQENCLLLHLDNKLGGIAVDVNLTEHSTV
ITFSNYHDGAAPFLLINHTKEDIEYGQSSLSELEDYLQPNKAVLYTWADPTGSRKLKWRC
GNRTEEIGPKEDKMDILTVDSRKAVYFMSFYEGLQRIVLITEDENVFKLTYESVKAELAE
QEIVLSLQDVGISLVNNYTKQEVSYIGITSSDVVWETKPKKKSRWRPMSVKQIDKLEQEF
RDYSELSPSENKIIELESNVLVCLTPNGMNMTIQQPNEIPIRRNYLPALKVEYSSSAHQK
SFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHI
KYFKVLIQEMDLRLDLGFLYAVGEFFAQTDVPSDQELELFKKDVESLQEELMSVSSMDTS
QISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKNELIPFQSLNLLLKSIGATLTDVQDI
LFKLAFFELQYHFCTTQQLQSAVVRHYSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVE
AFFYEPYQGAIQGPEEFIEGMALGFKALVGGAVGGLAGAASRITGAMAKGVAAITMDEDY
QQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVTKPIRGAQEEGAAGFFKGVGKG
LVGAVARPTGGIIDMASSTFQGIKKAADSSEDVISLRPPRFFGEDGVIRPYRLRDGTGSQ
MLQKRQAYKEWIMAHSSSDDDDS
NT seq
9252 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtccctggtcgtggacgtcctgaaccgcttccttggcgactacgtggtg
aatctggacagctcgcagctgaagctgggcatctggggaggagctgtagcactgaagaat
ctggaaataaaagaaaatgcattgagtcagttggatgtgccatttaaagttaaagcagga
catattagtcaacttaacctacagattccatggcaaaacctttatactcaaccagttgag
gcagtccttgatggagtttatttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaagccaggcagctcttggaggcaagacaaagggaattgcaaagaatagaagat
gcaaagcagaagatagctgaccgagataaagtaaaggaagagaaacaagacacttttgta
gaaaagctagttactcaggtcatcaaaaatcttcagctgaagatttccaacatccatatt
cgctatgaagatgacatcacaaatcgtgataaccctttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aagttgttccacaagcttgtacgactggataaccttttcgcttattggaatgtgaaatca
gagatgttctaccatggtggttgtgatgaatcattggttaacttaaaacagggagttgcc
agccacaacgtgattccagacggttatgattttgtattccgcccaatttcagctaaagcc
aaactccttatgaatcctcgatctgatgtcgacttttcatcaccgaaaatagatttagat
gtaaacttacaggatataactgttgaattcaataagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatatagaaagtacagacctgat
gttccagtgcacaacaacgccaagatatggtggaaatatgttcttgatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtgtttggaacatatttcacatcctaggaag
cgtgaagaactcttaagattattagaggaattcgaaaaggccttggatatttttaacatc
actctagcaaggcaacaggcagaagttgaggcaactaaggctggattgaaaatctacagg
ccaggagtaaaacaagacgatgaaaattctggtggctggtttagctggatatggagctgg
tcgggtgaaaaaaagaatgaaaaccaagaagtaaagggttcaagtctggaagaactgatg
acacaggaagagaaggctaaactttatgcggcaattggatatagtgaaacagctgtggat
ccaactcttccaaaatcttatgaagccatgaagttttctgtgaacttattaagcatgtcg
atatcaataaaagaaaacaagcaaactcctaagctaatagaatttgcgttagctgacttg
agtacagtatttacccaacgaccaggtgcacaagcaataaggtttgaaacaaaaattgcc
tcacttgaagttacaggagtgtctcaagaaaagtgtacaccccgtctcctgtcttctcga
acggtctattcagatgaaagtacctcacttttaagcataatgtttgagactaatcctttg
gatgagaaagcagatcagagaattagaatagaatcacaaccactggaaatagtatatgat
gcaataacagtaaatagcttagtggatttcttcagacctccaaaagatgtacatttagag
caattgacatcagcaactctcatgaaacttgaagaattccgtgaaaaaacatcaacaggt
ttgttgtacattattgaaactcagaaagttcttgacctcaaaataaacctcatggcttca
tacatcattgttccacaaaacggattctatgatcatacatcgaatttactacttctggat
cttggtagttttaaaatgacaagcaaaagtcgttctgatttatcacaaatcaaagtagga
caaacctctattgaagatataatgtcaagagcttatgacagttttgatgtccagctcagc
agtatgcagttactgtacagcaaacatgatgagaactggcgagaagctcggaagctgaaa
aattcacctcagtgtatcttgcagcccttggatgtaaaactggaatttagcagggctatg
gttgttacagatgcaagaatgcccaggttcaaactgtcaggacgattgcctttactttct
atccaaatatcagaccagaaggtgacaagtatcttggagctgattgatagcattcctcag
ccagaaagtgcccctgctaccagctctcctccaaaaatgactgaggctgtactgtcccct
atgctttcagcaccacatgtatctcaaggcgtgtatcctgttctggatcttcactcattg
gccgagtcagaatcagaggaagaattttatgatgcactaagcagtcctgtggaagatgtg
ccattttttgaagtcccaagtgattccgtcaagcaggctgtcagtacaaggcgaaaaacc
ctacacaaacaagaatctttgaaaaatatgacagatttccagctgaagtttgaagtagct
gaggtcttaattaaattatgccgtcttactggtgatactgagatgcctgtgctccagctt
ggtattttgggcttaggcactgaacttaaaatgagaacatttgacatgactgggaatgct
ttccttcgtgaagttggtcttctgtgcccagagtatattgatgataatggcaagccagtt
tacatagttactacattggataatgtagaagatgatcttctcactctggagtatataaag
actgatattaaaggaccagaactgaaaactgtctatcaaaatgttctacagaaaataaag
gtgaacttttcttctctagatgttcatttgcatactgaagctctgctgaatgctatgaac
tatctgaataatcttctacctaaacaagaaactaaagttgcagaagaaccggtccatgaa
aaaccagaggagaaaaaggatgttcttaaaaaattaacatcaaaaaaatcaaagtatgaa
gatgttattgacctcattatctgtgcagatttatcatgtttgagtatttttatcagagag
aaaaaccacaggatagctgaaattcacattgaaggtctggatagccaagtgattatgaag
aaagcagcaactgatatgactgcaaaattgaagaacatcattattgtggattctgatgag
acagcattgtataaaaaggctctttacatcacaggaaaagaagtcttcaacttcagaatg
gtatcatatgtgaatgctacagatggcactgcgtatacaaatatggatgttgttgacaat
cgtatttatctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatct
attttggcttttataaataattttcaagctgccaaggaagctcttactgaagcaactgtt
cgaacagctgagaaagcagctacaggtgtaaaaggtttagcagagcgtagttcccgtttg
gcactagatatcaatatcaaagcacctgttgtgataattccacagtcagcaatgtctgca
aatgtcctggtggctgatcttggtctaatcacggtgaagaaccaattctttattgctaaa
acaaaaacacgatgcagtgtcccacctgttattgactctatgacggtgaaattgagtgaa
ctgaagttatacagatcttactatgagcaagattctttgcaaactgaagtacagctgctg
cagccagtcagtctggaagtagctgttgaacgaaatttagctgctgcgtggtataatgaa
gttcctgatattgaaatatctggccgactcaagcctatgaacctcattcttagtcaggag
gatattaccacaatactgaggacactaaatgaaaatgcaggtgaaggctcgggtgcatca
acagctttgccagaatcaaaagcatcaactagtcattctagtgaaatgcatggtacttct
cagcactctgcaggtgtaactgtagtgacatcagctgtggtggaattgcattcacctatg
aaaataaaaacaacactaaaactggacttcagatttgactctctgactttagtgttgtat
agtccgaattcaaaacaggttaacagtttggatcagagagatgaccttttgaagcttgca
gagtttaaattagttctcatgtcagctgctctgaaaatgttgtcagatggttcaatgaat
gcttctgtcaaacttgcaaattgtacattagatgataaaagacagttgatccagaaggct
acaccaagaatggtggaaatgaaacatggatttgaaaagaaagttatggtggatgtaaac
tacaagcaggggagagatggcactgttcttgatgttattgttcaagagatatatctttgt
gcaagcatggagtttctacttactgtagcagatatattcctaaaagctaaagcagaaagt
gctgctgcgcagagaaatctgaaacagtcactacatgtaaaggaccaagcctctgtgcag
cctgtatctacgatggaaatgaacattgttgttaaaaatccagagattgtgtttgtggct
gatttaacaagaagtgatgctcctgcgctggtggttacaacacagtgtgaggtcttcatt
aaaagtagccctgaaaagtacaacatgacagctgctgttagagagatacagatgaaagca
tgcccatttcttccagaagaaaggaaagagaacattactacggtattgcagccttgtgac
ttcttctttgaaatgaaacagtcaggtactaatccacagacagctgatctaactattaaa
tctctgacaatagaagtttcaccaataatcataaacacagtaattaccattacatcagcc
ctttatcaaactaccgaaacaacgaatgaagagattagtcaaattcctcctgatttatgg
aataagaaagatataaaaaatctgaaattgtggtttcttgaagagactaatgaaaatgaa
gataaaaatccaaacaccgaactggttcccacaggagagtcattgaaaattaatatagaa
tctgtttttctaacacttgaagctggagttgggcacagaacagtgccaatgcttttagcc
aagtcctcatttgttggagaagtcaagaactggagtactctaatcaatctacattctcgt
cttgagctagaggtgcattattttaatgagatgtttggtgtgtgggaacctttgcttgaa
ccactagaagttgagaagactgacttattcaggccatggactcttgaaatcaagatgaag
aaggctaaaaaagcactgtttgaatcagatgatgaagaagaagagaactacaaagttcca
gaatataaaacagtaataaatgtttcctcgaaagaccagctcaacattacactgtccaaa
ttaggactgcagatgttaagtaacttgggcacggcgtttgctgaagcagctagtcaaact
tcagatgtcttcaaaaaagaccgagcaccatttgtaataataaattctttaggagttccc
atcacagtctcgcctagtgattcctttagcgtccttaatgttacgtttggagcaaaaata
tttcatttagaagacaaagagagtttaaatatggaatttgtcagaactagaaatgagagt
gaccagttcacagcaatgacaacactgagtagcaagagattttacattcagatctgtccg
cataatcattctactgtggaaaagattccattgactaaagtgggtcgatgcatttacaaa
gtgagacacgaggaatcaggtgttgaaaggtccattgtcagtcaaattgacactgttgaa
ggaagcaagatgataactatacgttccccgattcagataaggaatcacttttcaatcccg
ttaaatgtctttgaagaaggaagatgtttagggactgcttcaccagcaaatgaattcaac
atacccttttcctcttacagatccatattgagtttgcagccattagccaatgaaaacgga
gtgggagaatatgatatgtgtgaaggaattacgtttgatgaaattatgaaaaatgttgac
agtctattacaaaggaaatgccaatctgtgaagtcaactaaccaatcacttgtcatcaat
attgttcctgtaaaagattcattgacaacttcattaggtgcagaagatgaatgggatttt
ccatacgttgttcatttatggccttctgttcttctccgcaatcttcttccttaccaaatt
acttattctgtagagggaaatgggaacaaatatgacactctacaagaaggatgttctgcc
cagattcataatgcagtcttggaccaaacaaaactagatttgcagttgcttaactacctt
gatcaaaactggagaagcgagtaccatgtaaaaagcaatctgcctgatatcagcttcaca
acatttcactgtgtcacagagctggataagactgaactggatattgctgttcatgtgacc
tacacaactgggcagatgataatagcaattcacagtccctactggatggtgaataaaacc
ggtcgaatgttacaatacaaagcagatggtattcaccgcaagcatcctccagattacaaa
aagccactccttttttcttttcagcctaaaaacttccttcaaaataacaaggtgcagctt
agggtaactgacagtgaactgtctgatcagttttcactggacactgttggaagccatggt
tctgtgaaatgcaagagtcataaaaaggaatatcaagttggtgtcaccataaacaacagc
agtttcaatattactagaattgtaaccttcactccattttttatgatttcaaatagaagt
acatacactttggaagtagctgaagaaggcaaggaaaagtggattcccattgttttgcaa
cagtgcattcccttttggcctgaaaatgatgccaacaaattgcttgttagagtagaaaat
tctgatctccctccaaagaagataaattttgatcagcaagaaaactgtcttttattgcat
ttggacaataagctcggaggaattgcagtggatgtcaatctgactgaacattccacagtg
attacgttttctaattaccatgatggtgcagctccatttctgttgataaaccacaccaaa
gaggatattgagtatggacaaagctccctcagtgaattagaagactatcttcagccaaat
aaggcagtactgtatacttgggcagacccaacaggatctaggaaattaaaatggagatgt
ggaaatagaacagaggaaattggcccaaaagaggacaaaatggacatactcactgtggat
tctagaaaagctgtctatttcatgtcattttatgaaggtttgcagcgtattgttctgatc
actgaagatgagaatgtatttaaattgacatacgaaagtgtaaaagcagaactagcagaa
caagaaattgttctgtctttgcaagacgttggaatttcgttggttaataattatacaaaa
caagaggtgtcctatattggaattacaagttctgatgtcgtgtgggagacaaaacccaag
aagaagtcaagatggagaccaatgagtgtcaagcaaattgataaattagaacaagaattc
agagattacagtgagctaagtccttcagaaaataaaattattgagttggaatctaatgtt
ttggtgtgtttaactcctaatggaatgaacatgacaattcaacagccaaatgagattcct
atcagaagaaattatctgccagctttaaaggtggaatacagttcctctgcacatcagaag
tctttcagaattcaaatttacaggatacaaatacaaaaccagattcctggagccatattt
ccctttgtgttctatcctattaaacctccaaagtccatcaccttggattcagctcctaaa
ccgtttactgatgtcagtattgtcatgagaactgcaggacactcacaaatatctcatatt
aagtattttaaggttctgattcaagagatggatctcagattagatcttggcttcctgtat
gcagttggtgaattctttgcacagactgatgtgccaagtgaccaagagctagaacttttc
aaaaaggatgttgaatctcttcaagaagaactaatgagtgtgtcatcaatggatacatca
caaatcagcttgtatgaatacttccacatctctccaattaagttacacttgagcttttca
ctcagtacgggtggagaagatagtaacaaagaagaaagaaagaatgaattgataccattt
caatccttgaatctcctgctgaagagtataggagccacccttacagatgtacaagatatt
ctctttaagttggcattctttgagctccagtatcacttctgtactacacagcagctccaa
tcagcagttgtaaggcattattcaaaacaggcgattaaacaaatgtatgttcttattctt
ggccttgacgtgttgggtaatccatttgggttcataagaggcttgtctgaaggagtagaa
gctttcttctatgagccataccagggagccatccagggtcctgaggaatttatagaagga
atggcactaggatttaaagcactcgtagggggagctgtgggtggattagcaggagctgcc
tcgagaatcacaggtgctatggcaaaaggagtagctgcaataactatggatgaggattac
cagcaaaaaaggagagaagccatgaataaacaacccactggtctgagagagggtatcact
cgtggtggaaaaggactagtttctggttttgtcagtggcataacaggaatagttacgaag
ccaataagaggagctcaggaggaaggagcagctggttttttcaaaggtgttggaaaaggc
ttagtgggagcagtagctaggcccactggtggaatcatagatatggcaagcagtacattt
cagggtattaaaaaggctgcagattcatcagaagatgtgataagcctgcgaccacctcgt
ttctttggtgaagatggtgttattagaccttacagattacgagatggaactggaagtcaa
atgttacagaaaagacaggcctacaaagagtggattatggctcacagtagtagtgatgat
gatgacagttag
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integrated database retrieval system
