Saccharomonospora viridis: Svir_01790
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Entry
Svir_01790 CDS
T00980
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03090
RNA polymerase sigma-B factor
Organism
svi
Saccharomonospora viridis
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svi03021
]
Svir_01790
Transcription machinery [BR:
svi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Svir_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_Crp_2
HTH_23
HTH_3
HTH_24
MarR_2
MarR
KORA
DUF134
HTH_IclR
HNF-1_N
HTH_26
GerE
DUF7343
HTH_Tnp_4
Sigma70_ECF
HTH_31
HTH_10
DUF1492
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
ACU95266
UniProt:
C7MSF3
LinkDB
All DBs
Position
complement(187629..188432)
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AA seq
267 aa
AA seq
DB search
MTESTTQGSRTPSDDYQHLTPLFEEFAALDPDDPRRAELRDRLVTGHLPLAEHIAQRFSG
RGVAKEDLVQVARVGLINAVDRFDPSRGSDFLSFAVPTVMGEVRRHFRDTGWVIRVPRRL
KELHLSINNASTQLSQRLGRAPTPSEIADHLGLTLEEVFEGLEAGNAYHSMSLDEVLSAD
TENLALGDTLGEEDAALAGVENHETLQPLVKQLPERERTILALRFVHNMTQTQIAERIGI
SQMHVSRLLARTLKKLREGLVEEDNIG
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaatcgacgactcaaggatcacggaccccgtcggacgactaccagcacctgaca
ccgctgttcgaggagttcgcggcactcgatccggacgaccctcgtcgggccgaactacgg
gaccgactcgtcacgggtcacctgccgttggccgaacacatcgcgcagcggttctcggga
cggggtgtggccaaggaagacctggtgcaggtcgcccgggtaggactcatcaacgcggtg
gaccggttcgacccgtcccgcgggtcggacttcctgtccttcgcagtgcccaccgtgatg
ggcgaggtgcggagacacttcagggacaccggttgggtcatccgggtcccccggcgactc
aaggaactgcacctttcgatcaacaacgcgagtacccagctgtcccaacggttgggcaga
gcaccgacaccgagtgagatcgccgaccatctcggactcaccctcgaggaggtcttcgag
gggttggaggcgggcaacgcctaccactcgatgtccctggacgaggtgttgtcggccgac
accgagaacctggcgctcggggacaccctcggcgaggaggacgccgcgctggccggggtg
gagaaccacgagacactgcagccactggtcaaacagctacccgaacgggaacgcaccatc
ctcgcgctgcggttcgtgcacaacatgacgcagacccagatcgccgaacgcatcgggatc
tcccagatgcacgtctcccgcctgctggcccggacgctgaagaaactccgcgaagggctc
gtggaggaggacaacatcggctga
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integrated database retrieval system
