Saccharomonospora viridis: Svir_03810
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Entry
Svir_03810 CDS
T00980
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Svir_03810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svi03021
]
Svir_03810
03400 DNA repair and recombination proteins [BR:
svi03400
]
Svir_03810
Enzymes [BR:
svi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Svir_03810
Transcription machinery [BR:
svi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Svir_03810
DNA repair and recombination proteins [BR:
svi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Svir_03810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACU95458
UniProt:
C7MTI8
LinkDB
All DBs
Position
380014..383925
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRQNDLPTLENEINVERKNIENKRDAEIEQRAQKLEAD
LAELEAEGAKADVRRKVKESGEREMRQIRDRAQRELDRLEEVWTTFTKLEPRQLIVDEQL
YRELYDRYGEYFTGGMGAEAIQKLASEFDVDAEAEALRETIRTGKGQKKLRALKRLKVVA
AFQSTGNDPRGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAKGAGA
AYSSPAEAIMAYDRGQLALHAPVKIRIHDRQPPKSEEAALREKGWEPGKPWLAETTLGRV
LFNDLLPEDYPFVNEVLPKKRQAAIVNDLAERYSMTQVAQTLDGLKDAGFHWATRSGVTI
SITDVVVPPQKQELLEQYEAKAAQVEKRYQRGQLSHAERNNELVKVWSQATEDVAKAMEE
NLPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLTVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGITRTIADELPDGRLV
RAEHVETSVYARNLAADAVDEQGNVILNAGEDLSDPAIERLIQAGISKVKVRSVLTCESA
MGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLAIGP
NGPLADGDHVKVGQPLLEGTPDPHEVLRVMGPREAQMHLVEEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTEFLPGELPERSKFEQVNRKAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDALIGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaatttcttcgatgagctccggatcggtctcgccacggccgacgacatc
cgtcagtggtcttacggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctcttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggtgtc
gaggtgactcgcgccaaggtgcgtcgcgagcggatgggccacatcgagctggccgcaccg
gtcacccacatctggtacttcaagggtgttccttcgcgtctgggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccagcgtgaac
acggagctgcgacagaacgacctgccgacgttggagaacgagatcaacgtcgagcggaag
aacatcgagaacaagcgtgacgccgagatcgagcagcgggcgcagaagctcgaggccgac
ctcgccgagttggaggccgagggcgccaaggccgacgttcgccgcaaggtcaaggagagc
ggcgaacgcgagatgcggcagatccgcgaccgtgcccagcgcgagctggaccgcctggag
gaggtctggacgaccttcaccaagctggagccgcgtcagctcatcgtggacgagcagctt
taccgggagctgtacgaccgctacggcgagtacttcaccggcggcatgggcgccgaggcc
atccagaagctggccagcgagttcgacgtcgacgctgaggccgaagcgctgcgcgagacc
atccgcaccggtaagggccagaagaagctgcgtgccctgaagcgactgaaggtcgtcgcc
gcgttccagtccaccggcaacgacccgcgcggcatggtgctcgacgcgatcccggtcatc
ccgccggagctgcgtccgatggtccagctcgacggtggtcgtttcgccacctctgacctc
aacgacctgtaccgtcgtgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgttgcaggaggccgtcgacgcg
ttgttcgacaacggccgtcgcggtcgccccgtcaccggtcctggtaaccgtccgctgaag
tcgctgtccgacctgctcaagggcaagcagggacggttccggcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcatcgtcggtccgcagttgaagctgcaccag
tgcggtctgcccaaggacatggcgctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcacagaacatcaagtccgccaagcggatggtcgaacgtgcccgt
ccgcaggtgtgggacgtgctggaagaggtcatcaacggccaccccgtgctgctcaaccgt
gctccgacgctgcaccgtctcggtatccaggcgttcgagccgcagctcgtggaaggtaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggcgaccag
atggcggtgcacctgccgctgtccgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcggcgaacaacatcctgtcgcccgcgtcgggtcgtccgctcgccatgccgcgtctggac
atggtgaccggcctgttccacctcacccgtctcgacgagaacgcgaagggtgcgggtgcg
gcctactcctcgcccgccgaggcgatcatggcctacgaccgcgggcagctcgcgctgcac
gccccggtgaagatccggatccacgaccgccagccgccgaagtcggaagaggcggcgctg
cgcgagaagggttgggagcccggaaaaccgtggttggctgagacgacgcttggccgggtg
ctgttcaacgacctgctgccggaggactacccgttcgtcaacgaagtcctgccgaagaag
cggcaggccgcgatcgtcaacgacctcgccgagcggtactcgatgacccaggtcgcgcag
accctcgacgggctcaaggacgccggcttccactgggcgacgcgttccggcgtgaccatc
tccatcaccgacgtggtcgtgccgccgcagaagcaggagctgctcgagcagtacgaggcc
aaggccgcgcaggtggagaagcgctaccagcgtggtcagctgtcccacgccgagcgcaac
aacgagctcgtcaaggtgtggagccaggcgaccgaggacgtcgccaaggccatggaggag
aacctccccgacgacaacccgatcgcgatgatcgtgaagtccggtgcggcgggcaacatg
acccaggtccggtcgctggccggtatgcgtggtctggtgtccaacccgaagggtgagtac
atcccgcgcccgatcaaggccaacttccgtgagggcctgacggtggcggagtacttcatc
gccacgcacggtgcccgtaagggtctggccgacaccgctctgcggaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtgcgcgagaccgactgt
ggcaccagccgcggtatcacgaggaccatcgcggacgagctgcccgacggccgtctggtg
cgtgccgagcacgtcgagaccagcgtctacgcccgcaacctcgccgccgacgcggtggac
gagcagggcaacgtgatcctcaacgcgggtgaggacctgagtgaccccgccatcgagcga
ctcatccaggcgggcatcagcaaggtcaaggtccgcagcgtgctcacctgcgagtcggcg
atgggcgtgtgcgccacctgctacggccgctccatggcgaccggcaagctggtcgacgtc
ggtgaggcagtcggtatcgtcgccgcccagtcgatcggtgaacccggtacgcagctgacg
atgcggacgttccaccagggtggtgtcgccggcgacgacatcaccacgggtctgccgcgt
gtcaccgagctgttcgaggcccgggtgccgaagggcaaggcgccgatcgccgatgtcgac
ggccgggtgcggatcgaggagagcgagcggttctggaagatcacgctcatcccggacgac
ggcagcgaggagatcgtcttcgacaagttgtcgaagcggcagcgactcgcgatcggtccg
aacggcccgctggcggacggcgaccacgtcaaggtcggtcagccgctgctggaaggtacg
ccggacccgcacgaggtgctgcgtgtgatggggccgcgcgaggcgcagatgcacctggtg
gaggaagtccagaaggtgtaccgcgcgcagggtgtgtccatccacgacaagcacatcgag
gtcatcgtgcgccagatgctgcgccgcgtgacgatcatcgattccggttcgaccgagttc
ctgcccggcgaactgcccgaacgctccaagttcgagcaggtcaaccgcaaggcggtggcg
gaaggcggcgaacccgcgtcgggtcgtccggtgctgatgggcatcacgaaggcgtcgctg
accacggactcgtggctgtcggcggcctccttccaggagaccacccgtgtgctcaccgac
gcggccatcaacggccgtagtgacgcgctgatcggtctcaaggagaacgtgatcatcggt
aagttgatcccggcgggtacgggcatcaaccggtaccgcaacatccaggtgcagccgacg
gaggaggccagggtcgccgcctacgcgatcccgtcctacgacgatggctactacacgcct
gacgtgttcggcaccggtaccggcgccgccgtcccgttggacgactacgacttcggtcgc
gacttccggtag
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integrated database retrieval system
