Saccharomonospora viridis: Svir_23210
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Entry
Svir_23210 CDS
T00980
Name
(GenBank) uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
svi
Saccharomonospora viridis
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svi03016
]
Svir_23210
Enzymes [BR:
svi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Svir_23210
Transfer RNA biogenesis [BR:
svi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Svir_23210
Prokaryotic type
tRNA splicing ligases
Svir_23210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACU97329
UniProt:
C7MXQ0
LinkDB
All DBs
Position
complement(2503815..2505011)
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AA seq
398 aa
AA seq
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MSVYTTIEGARTDIRLWTDPATVEDEALRQLHNVTTLPWIHGVAVMPDVHYGKGATVGSV
IALRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGPLRKRIEDAVPVGFDMHDRPVDV
ARVTGVGGWGEFWSRFSSLHPGVQKLRERAHRQLGTLGGGNHFIEVCLEQGGEDDGRVWL
MLHSGSRGIGNELAKRHIEIAKSLPHNADLPDRDLAVFVTGTPEMEAYRNDLYWAQEYAA
RNRATMLALVKKALADEVPGVRFDEPISCHHNYVAEERYDGVDLMVTRKGAIRAAKGDLG
IIPGSMGTGSYIVRGLGNEASFQSASHGAGRRMSRAKARRSFTAADLAEQTRGVECRKDA
GVVDEIPGAYKDIDSVIKAQSDLVEVVAHLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtacacgacgatcgagggagcgaggacggatatccggctgtggacggaccct
gcgacagtggaggacgaggcgctgcgtcagctccacaatgtcaccacgctcccctggatc
cacggtgtggcggtcatgcccgacgtccactacggcaagggggccactgtcggcagcgtc
atcgcgctgcgtgatgccgtgtccccggcggccgtcggggtggacatcggctgcggcatg
tccgcggtacgcacttcgttgaccgcctcggacctgcccgatgacctcggtccgctccgg
aagcggatcgaggacgccgtcccggtgggattcgacatgcacgacaggcccgtcgacgtg
gcgagggtgaccggcgtcggcgggtggggcgagttctggtcccggttctcctccctgcac
ccgggggtgcagaagctgcgggagcgcgcgcaccgacagctgggcacgctcgggggcggt
aaccacttcatcgaggtgtgcctggagcagggcggtgaggacgacggccgggtgtggctc
atgctgcactccgggtcccggggcatcggtaacgagctcgccaagcgccacatcgagatc
gccaagagcctgccgcacaacgccgacctgcccgaccgggatctcgccgtgttcgtgacg
ggcactccggagatggaggcgtaccggaacgacctgtactgggcccaggagtacgccgcc
cgtaaccgggccacgatgctggccctggtgaagaaggccctcgccgacgaggtgccgggc
gtgcggttcgacgagccgatctcgtgccatcacaactacgtggccgaggagcgctacgac
ggcgtggacctgatggtgacccgcaagggggcgatccgggcggccaagggggacctgggc
atcatccccggcagtatgggcaccggctcgtacatcgtgcggggactgggcaacgaggcg
tcgttccagtccgcctcccacggtgcgggcaggaggatgagtcgggcgaaggcccgtcgg
tcgttcaccgccgccgacctcgccgagcagacgcgaggcgtggagtgccggaaggacgcg
ggggtcgtcgatgagatccccggcgcctacaaggacatcgactcggtgatcaaggcgcag
tcggacctggtggaggtggtcgctcacctcaaacaggtcgtgtgcgtcaagggctga
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