Saccharomonospora viridis: Svir_24120
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Entry
Svir_24120 CDS
T00980
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
svi
Saccharomonospora viridis
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svi03016
]
Svir_24120
Enzymes [BR:
svi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Svir_24120
Transfer RNA biogenesis [BR:
svi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Svir_24120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACU97408
UniProt:
C7MYI9
LinkDB
All DBs
Position
2601463..2602704
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AA seq
413 aa
AA seq
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MDNADHSSGTPGDSAPLPLTEPAEGTPDVIADPDTLRAACERLAEGSGALAVDTERASGY
RYWPKAYLIQIRREGAGTFLIDPIPLRDHFTPLAEVMNQVEWVLHAASQDLPCLAELGLH
PPSLFDTELAGRLAGYQRVALGTLVESLLGYQLEKGHSAADWSRRPLPLDWLNYAALDVE
LLLPLREKLEEELAASGKLEWARQEFEAVRTAKPPAPRAEPWRRTSGIHKVRTARGLAAV
RALWEARDELARRRDRAPGRILPDSAIINAVLADARTSADLEKLPVFRGRVQRKQATHWL
RQLQRARTLPESELPSTAVTYDGPPPPNRWAEKNPDAAARLAAAKAALADIAERNRLPVE
NLLLPELVRRLCWQPPEDTSRESVATALAEGGARPWQIELTAAELSKALRAQA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtggacaacgcagatcacagctccggcacgccgggggactctgcgccgcttccgctgaca
gagcctgcggaaggcacccctgacgtcatcgccgatcccgacacgttgcgggcggcgtgc
gaacgattggccgagggcagcggagccctcgccgtggataccgaacgtgcttccggctac
cgatactggccgaaggcatatctcatccagatccggcgcgaaggcgccggcacgtttttg
atcgatcccatcccgttgagggaccacttcacaccgctggccgaagtgatgaaccaggtc
gagtgggtactgcatgcggcctctcaggacctgccttgtttggccgaactcggtctgcat
ccgccttcgctgttcgacacggagttggccggtcggctcgccggctaccaacgggtggcg
ttggggacgctggtggagtcgctgctgggatatcagctggagaagggacacagcgcggcc
gactggtcccgacgaccgcttccactcgactggctgaactacgccgcgctcgacgtggaa
ctgctgctgccgttgcgggagaagttggaggaggaactggcggcctcggggaaactcgaa
tgggctcgtcaggagttcgaagccgtccgcaccgccaaacctcccgctcctcgagccgaa
ccgtggcgacgcacctcgggaatccacaaagtgcgtaccgcacggggcctggcggccgta
cgcgcactgtgggaggccagagacgaactggcgcgtcgacgcgaccgggcacccggccgc
atcctgccggacagcgcgatcatcaacgcggtgttggccgatgcccgaacctcggctgat
ctggagaaactccccgtgttccgagggcgggtccaacgtaaacaagccacgcattggctc
cggcaattacagcgcgcacgcaccctgcccgagtccgagctccccagcaccgccgtcacg
tacgacggtcctccgccaccgaaccggtgggccgagaagaatccggacgccgcggcccgg
ctggccgcggcgaaagccgcgctggccgacatcgccgagcggaaccggcttcccgtggag
aacctgctgctgccggagctcgtccgccgcctgtgctggcaaccccctgaggacacgtcg
cgggagtccgtggccaccgcgctcgccgagggcggtgcccggccgtggcagatcgagttg
acggccgcggaactcagcaaggcactgcgcgcacaggcctga
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