Saccharomonospora viridis: Svir_24330
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Entry
Svir_24330 CDS
T00980
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
svi
Saccharomonospora viridis
Pathway
svi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Svir_24330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svi03021
]
Svir_24330
Transcription machinery [BR:
svi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Svir_24330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ACU97427
UniProt:
C7MYK8
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All DBs
Position
2622506..2623825
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AA seq
439 aa
AA seq
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MDETATPETKSSGRKTAAKKAPAKSAKTTRTRKTTTKSDKAKTTTRSKASKSTSKAKSKK
SAELDEGFDSPELEDVDLSDLDVDAVEVDVVDATVTEDTDESDEESDANDPDFVWDEEES
EALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRIAEEE
GEKLSTQMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLI
RAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQD
LGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVD
AVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK
TMSKLRHPSRSQVLRDYLD
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
gtggacgaaacggccacgccggagacgaagtcgtcgggtcgtaagacggccgcaaagaag
gctcccgcgaagtccgcgaagaccacccggacgcgcaagaccaccaccaagtcggacaag
gccaagacgacgactcggtcgaaggccagcaagagcaccagcaaggccaagagcaagaag
tccgccgagctggacgagggcttcgacagtccggagctcgaggacgtcgacctgtccgac
ctcgacgtcgacgccgtggaagtggacgtcgtcgacgcgaccgtcaccgaggacaccgac
gagtccgacgaggagtccgacgccaacgacccggacttcgtgtgggacgaggaggagtcc
gaggctctgcgtcaggcgcgtaaggatgctgagctcaccgcatccgccgactcggtgcgg
gcctacctgaagcagatcggtaaggtcgcgctgctcaacgccgaggaggaggtcgagctc
gccaagcgcatcgaggccggcctttacgccgccgagcgcctgcggatcgccgaggaggag
ggcgagaagctctccacccagatgcgccgcgacctgaagtggatcgtgcgcgacggggag
cgggccaagagccacctgctcgaggcgaacctccggctcgtggtgtcgctggccaagcgc
tacaccgggcgcggcatggcgtttttggacctcatccaggagggcaacctgggcctgatc
cgcgcggtggagaagttcgactacaccaagggcttcaagttctccacctacgcgacgtgg
tggatccgccaggccatcaccagggccatggccgaccaggcccgcaccatccgcatcccg
gtgcacatggtggaggtcatcaacaagctcggccggatccagcgcgaactgctgcaggac
ctgggccgcgaacccactccggaagaactcgccaaggagatggacatctccccggagaag
gtcctggagatccagcagtacgcccgggagccgatctcgttggaccagacgatcggcgac
gagggcgactcgcagctgggtgacttcatcgaggacagcgaggccgtggtggccgtggac
gcggtgtcgttcacgttgctgcaggatcagctgcagtcggtgctgcagacgctgtccgaa
cgtgaggccggtgtggtgcggttgcgcttcggtctcaccgacggtcagcctcgcacgctg
gacgagatcggccaggtgtacggcgtcacacgggaacgcatccggcagatcgagtccaag
accatgtcgaagttgcgccacccgtcccgctcgcaggtcctgcgggactacctggactag
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