Saccharomonospora viridis: Svir_34390
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Entry
Svir_34390 CDS
T00980
Name
(GenBank) chaperonin GroL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
svi
Saccharomonospora viridis
Pathway
svi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Svir_34390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svi03019
]
Svir_34390
03110 Chaperones and folding catalysts [BR:
svi03110
]
Svir_34390
03029 Mitochondrial biogenesis [BR:
svi03029
]
Svir_34390
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svi04147
]
Svir_34390
Enzymes [BR:
svi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Svir_34390
Messenger RNA biogenesis [BR:
svi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Svir_34390
Chaperones and folding catalysts [BR:
svi03110
]
Heat shock proteins
HSP60 / Chaperonin
Svir_34390
Mitochondrial biogenesis [BR:
svi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Svir_34390
Exosome [BR:
svi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Svir_34390
Exosomal proteins of other body fluids (saliva and urine)
Svir_34390
Exosomal proteins of breast cancer cells
Svir_34390
Exosomal proteins of colorectal cancer cells
Svir_34390
Exosomal proteins of bladder cancer cells
Svir_34390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CbiA
Motif
Other DBs
NCBI-ProteinID:
ACU98403
UniProt:
C7MPY0
LinkDB
All DBs
Position
complement(3744458..3746083)
Genome browser
AA seq
541 aa
AA seq
DB search
MAKLIAFDEEARRGLERGLNTLAEAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIE
LEDPWEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGADPIALKRGIE
KAVEAITEQLHKMAKEVETKEQIAATASISAADKTIGELIAEALDKVGKEGVVTVEESNT
FGLELELTEGMRFDKGYISGYFATDAERQEAVLEDPYILLYGSKISNVKDLLPVLEKVMQ
ANKPLLIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVIT
EDVGLKLENADLSLLGKARKVVVTKDETTIVEGAGDADQIQGRVNQIRAEIENSDSDYDR
EKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQA
SKTAFEGLKLEGDEATGANIVKVAVEGPLKQIAENAGLEGGVVVEKVKTLPQGHGLNAAS
GEYEDLMAAGVIDPAKVTRSALQNAASIAALFLTTEAVVADKPEKEKAGDAAGMGGMDGM
M
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccaaactgattgcgttcgacgaggaagcccgtcgtggtctcgagcgcgggctgaac
accctcgcggaggccgtcaaggtgacgctcggcccccggggccgcaacgtcgtgctcgag
aagaagtggggcgcgccgacgatcaccaacgacggtgtttcgatcgcgaaggagatcgag
cttgaggacccgtgggagaagatcggggccgagctcgtcaaggaagttgccaagaagacc
gacgacgtcgcgggtgacggcaccaccaccgccacggtgctcgcccaggccctcgtgaag
gagggtctgcgtaacgttgccgccggtgccgacccgatcgcgctgaagcgcggcatcgag
aaggccgtcgaggccatcaccgagcagctgcacaagatggccaaggaggtcgagaccaag
gagcagatcgcggccaccgcgtcgatctccgcggccgacaagaccatcggtgagctgatc
gccgaggccctcgacaaggtcggcaaggaaggcgtcgtcaccgtcgaggagtccaacacc
ttcgggctggagctcgagctcaccgagggtatgcgcttcgacaagggctacatctccggc
tacttcgccaccgacgccgagcggcaggaagccgttctggaggacccgtacatcctgctg
tacggctccaagatctccaacgtcaaggacctgctgcccgtcctcgagaaggtcatgcag
gccaacaagccgctgctgatcatcgccgaggacgtcgagggcgaggccctggccaccctg
gtcgtcaacaagatccgcggcaccttcaagtccgtcgccgtcaaggctccgggcttcggt
gaccgtcgtaaggcgatgctgcaggacatggccatcctcacgggcggccaggtcatcacc
gaggacgtcggcctcaagctggagaacgccgacctctccctgctcggcaaggcccgcaag
gtcgtcgtcaccaaggacgagaccaccatcgtcgagggtgccggcgacgcggaccagatc
cagggccgggtcaaccagatccgcgcggagatcgagaacagcgactccgactacgaccgc
gagaagctgcaggagcggctggccaagctggccggtggcgtcgccgtcatcaaggccggc
gctgccaccgaggtcgagctcaaggagcgcaagcaccgcatcgaggacgcggtgcgtaac
gccaaggccgccgtcgaggagggcatcgtcgccggtggtggcgtgaccctgctccaggcg
tccaagaccgcgttcgagggcctcaagctcgagggcgacgaggcgaccggcgccaacatc
gtcaaggtggccgtcgagggcccgctcaagcagatcgcggagaacgcgggtctcgagggt
ggcgtcgtggtggagaaggtcaagaccctgccgcagggccacggcctgaacgccgcctcg
ggcgagtacgaggacctgatggccgcgggcgtcatcgacccggccaaggtgacccgttcc
gccctccagaacgccgcctccatcgcggctctgttcctgaccacggaggccgtggtcgcg
gacaagccggagaaggagaaggccggtgacgcggccggcatgggcggcatggacggcatg
atgtga
DBGET
integrated database retrieval system
