Streptomyces violascens: HWN34_06255
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Entry
HWN34_06255 CDS
T08842
Name
(GenBank) HAMP domain-containing protein
Organism
svio
Streptomyces violascens
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
Response_reg
HATPase_c
HisKA
GAF_2
GAF
IcmF-related_N
DUF4795
OKR_DC_1_N
RNase_Y_N
Motif
Other DBs
NCBI-ProteinID:
QLA56200
LinkDB
All DBs
Position
complement(1482833..1488229)
Genome browser
AA seq
1798 aa
AA seq
DB search
MDAAQLQRLKSALAAMRDGNFRRRLTVTGDGVMAEVAALFNEVADRNLHLTGELSRVRRT
VGREGKLTERLETGVCEGSWASAIEASNALVDDLVHPVSEVGRVLSAVADGDLEQRMELR
TQAPDGSGHPLRGEFLKVGRTVNNLVDQLSRFTDEVTRVASEVGTEGKLGGQAQVRGMSG
SWKDLTDSVNTMAYRLTAQVRDIALVTTAVARGDLSRKVTVHVAGEMLELKNTVNTMVDQ
LSSFSSEVTRVAREVGTEGELGGQARVPGVDGVWKDLTDSVNLMASNLTAQVRGIAQVTT
AVANGDLSRKVTVSARGEVAQLAETINQMTETLRTFADEVTRVAREVGVEGQLGGQANVP
GAAGTWKDLTDSVNTVFRNLTTQVRDIAQVTTAVANGDLSQKVTVDVSGEMLELKNTVNT
MVDQLSAFGAEVTRVAREVGVEGELGGQATVQGAAGTWKDLTDSVNTAFRNLTGQVRNIA
QVTTAVANGDLSQKVTVDVSGEMLQLKNTVNRMVDQLSSFADQVTRMARDVGTEGRLGGQ
ARVDGVSGTWKELTDSVNLMAGNLTAQVRQIAQVTTAVAQGDLSQKIGMDARGEILELKN
TINTMVDQLSAFADEVTRVAREVGTEGRLGGQAQVPGVAGVWRDLTDSVNGMAGNLTAQV
RQIAQVATAIARGDLSQKIDVDARGEILELKNTLNTLVDQLSAFAEQVTRVSREVGTEGI
LGGQARVDGVSGTWKDLTQSVNSMANNLTMQVRNIAEVTTAVARGDLSKKITVDAKGEIL
ELVTTVNTMVDQLSNFAEQVTLVAREVGTEGNLGGQARVPGVTGIWKDLSDNVNTMANNL
TGQVRNIAHVATAVANGDLTKKVTVEASGEVAQLADTVNTMVTTLSSFADEVTRVAREVG
TDGILGGQARVPGSSGTWKDLTESVNSMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDAR
GEILELKTTINTMVDQLSSFAEQVTRVAREVGTEGQLGGQARVRDVDGTWRDLTESVNEM
AQNLTRQVRAIAAVATAVTRGDLQLKIDVDAAGEIQALQDNINTMITNLRDTTLANKEQD
WLKGNLARISGLMQGRRDLTDVASLIMSELTPVVSAQHGAFFIAAPTEEDPDLSAEAREN
AYELRMIGSYGYSMGSMPTAFKPGESLIGAAAQEKRTILVDHVPSGYLKIASGLGEAPPA
HVIVLPLLFEGTVLGVIELAAFQQFTHIQRDFLSQLAEMIATSVNTISVNTKTEELLKQS
QELTEQLRDRSEELEVRQKALQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERA
EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD
LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA
TLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADAD
LIAFSVTDTGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA
SEPGRGSTFTLYLPLHPAELPPQGYAQLAPAVEPKGELPAGQEPQSTEPVPTEPLKDTRN
GPVSLFRRRRRAAEETAAGTDGGAGQAQPRTTSLGRPLDAPPEERPAREPVSFDGQKVLI
VDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGYATTS
AIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVMEGWMSQDG
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
gtggacgcggcccagctccagcgcctgaagtccgccctggccgcgatgcgcgacggcaac
ttccggcgccgccttacggtgaccggcgacggcgtgatggccgaggtcgccgcgttgttc
aacgaggtcgcggaccgcaatctgcatctgaccggagagctgtcgcgggtgcggcgcacg
gtcggacgtgagggaaaactcacggagcggctggagacgggggtctgcgagggctcctgg
gcctcggcgatcgaggcgtccaacgcgctcgtcgacgacctggtccatcccgtctccgag
gtcggccgggtactctccgccgtcgccgacggtgacctggagcagcggatggagctgcgg
acgcaggcgccggacggctcggggcatccgctgcgcggggagttcctgaaggtcggccgg
acggtcaacaacctggtcgaccagttgtcgcggttcaccgacgaggtgacccgggtggcc
agcgaggtcggtaccgagggcaagctgggcggccaggcgcaggtgcggggcatgtccggt
tcgtggaaggacctcacggactccgtcaacaccatggcgtaccggctgaccgcgcaggtg
cgggacatcgcgctggtgaccacggcggtggcccggggtgatctgtcgcgcaaggtgacg
gtgcacgtcgcgggcgagatgctcgaactcaagaacaccgtcaacacgatggtggaccag
ctgtcgtcgttctcctccgaggtgacgcgcgtcgcccgcgaggtgggtaccgagggtgag
ctgggcgggcaggcgcgggtgcccggggtggacggggtgtggaaggacctcaccgattcg
gtgaacctcatggcctccaacctgaccgcgcaggtgcgcgggatcgcccaggtcaccacc
gccgtcgccaacggtgacctctcccgcaaggtgacggtgagcgcgcgtggcgaggtcgcc
cagctcgccgagaccatcaaccagatgaccgagacgctgcgcaccttcgccgacgaggtg
acccgcgtcgcccgggaggtcggcgtcgagggccagctcggcgggcaggccaacgtgccg
ggcgccgccggtacctggaaggacctgaccgactcggtcaacacggtcttccggaacctg
accacgcaggtgcgcgacatcgcgcaggtgacgacggcggtggccaacggtgacctctcg
cagaaggtcacggtggacgtctccggcgagatgctggagctgaagaacaccgtcaacacc
atggtcgaccagctctcggcgttcggcgccgaggtgacccgggtggcccgcgaggtcggc
gtcgagggtgaactgggcggccaggccaccgtgcagggcgcggccggcacctggaaggac
ctcaccgactcggtcaacaccgcgttccgcaacctcaccggccaggtccgcaacatcgcc
caggtgacgacggcggtggccaacggcgacctctcgcagaaggtcacggtcgacgtctcc
ggcgagatgctccagctgaagaacaccgtgaaccgcatggtggaccagctctcctccttc
gccgaccaggtcacgcggatggcccgggacgtggggaccgagggccgcctcggcggtcag
gcccgggtggacggggtcagcggcacctggaaggagctgaccgactccgtcaacctcatg
gccggcaacctcaccgcgcaggtgcggcagatcgcccaggtcaccacggctgtggcgcag
ggcgacctctcgcagaagatcggcatggacgcccgcggcgagatcctggagctgaagaac
accatcaacacgatggtggaccagctctccgccttcgccgacgaggtgacccgggtggcc
cgcgaggtgggcaccgagggccggctcggcggccaggcgcaggtgcccggcgtggcaggc
gtctggcgcgacctgaccgactcggtgaacggcatggccggcaacctcaccgcgcaggtc
cgccagatcgcccaggtggccaccgccatcgcccggggtgacctgtcgcagaagatcgac
gtggacgcccggggcgagatcctggagctgaagaacaccctgaacaccctggtggaccag
ctctcggccttcgccgagcaggtcacccgggtctcccgcgaggtcggtaccgagggcatc
ctcggcggccaggcgcgggtcgacggggtctccggcacctggaaggacctcacccagtcg
gtgaacagcatggccaacaacctgaccatgcaggtccgcaacatcgccgaggtcaccacc
gccgtggcgcgcggcgacctctcgaagaagatcaccgtcgacgccaagggcgagatcctc
gaactggtcaccaccgtcaacacgatggtcgaccagctctccaacttcgccgagcaggtg
accctggtcgcccgtgaggtgggtaccgagggcaacctcggcggtcaggcgcgggtgccg
ggcgtcaccggcatctggaaggacctgagcgacaacgtcaacacgatggcgaacaacctc
accggccaggtgcggaacatcgcccacgtcgccaccgccgtggccaacggcgacctgacc
aagaaggtcaccgtcgaggcgagcggcgaggtcgcccagctcgccgacaccgtcaacacc
atggtgacgaccctgtcgtccttcgccgacgaggtgacccgcgtcgcccgcgaggtgggc
accgacggcatcctgggcggccaggcccgcgtgccgggaagctcggggacctggaaggac
ctcaccgagtcggtgaactcgatggcctccaacctcaccggccaggtccgcaacatcgcg
atggtcaccaccgccatcgccaagggtgacctcaccaagaagatcgacatcgacgcccgg
ggggagatcctggagctgaagacgaccatcaacaccatggtcgaccagctctcctccttc
gcggagcaggtcacccgggtggcccgcgaggtgggtacggagggccagctcggcggccag
gctcgggtccgcgacgtcgacggcacctggcgcgacctcaccgagtcggtgaacgagatg
gcgcagaacctcacccgccaggtgcgcgccatcgcggccgtcgccaccgcggtgacccgc
ggcgatctccagctgaagatcgacgtggacgcggccggcgagatccaggcgctccaggac
aacatcaacacgatgatcaccaacctgcgcgacaccaccctcgccaacaaggagcaggac
tggctcaagggcaacctcgcgcggatctccggtctcatgcagggccgccgcgacctcacc
gacgtcgcctcgctgatcatgagcgagctgaccccggtggtctcggcccagcacggcgcg
ttcttcatcgccgcgcccaccgaggaggacccggacctctcggcggaggcccgcgagaac
gcgtacgagctgcggatgatcgggagctacggctactcgatggggtcgatgccgaccgcc
ttcaagcccggtgagtcgctgatcggggcggccgcgcaggagaagcggacgatcctcgtc
gaccatgtgccctccgggtacctgaagatcgcctcggggctcggggaggcgccgcccgcc
catgtgatcgtgctgccgctgctcttcgagggcaccgtgctcggcgtgatcgagctggcc
gccttccagcagttcacccacatccagcgggacttcctcagccagctcgccgagatgatc
gcgaccagcgtcaacaccatcagcgtcaacaccaagaccgaggagctgctgaagcagtcg
caggagctgaccgagcagctgcgggaccgctccgaggagctggaggtccggcagaaggcg
ctccaggcgtccaacgccgaactggaggacaaggccgagctgctggcccgtcagaaccgc
gacatcgaggtcaagaacaccgagatcgaggacgcccggcaggtgctggaggagcgcgcc
gagcagctcgccgtctccatgcggtacaagtcggagttcctggccaacatgtcgcacgag
ctgcgcaccccgctcaactcgctgctgatcctcgccaagctgctcgccgacaacgccgag
ggaaacctctccccgaagcaggtggagttcgccgagacgatccacggggccggatccgac
ctgctccagctgatcaacgacatcctcgacctctccaaggtcgaggcgggcaagatggac
gtcagcccgacccggatcgccctggtccagctggtcgactacgtcgaggccaccttccgg
ccgctcaccgccgagaagggcctggacttctccgtccgggtctccccggagctgcccgcc
accctccacaccgacgagcagcggctcctccaggtcctgcgcaacctgctctccaacgcg
gtgaagttcaccgacagcggcgccgtggagctggtcatccggccggccgccgccgacgtc
cccgacgcgatcagggagcagctgctggaggccggttcgctggccgacgccgacgccgac
ctcatcgccttctccgtcaccgacaccggtatcggcatcgcctcgggcaagatgcgggtc
atcttcgaggcgttcaagcaggccgacggcaccaccagccgcaagtacggcggtaccggc
ctcggcctctccatcagccgggagatcgcccgcctcctcggcggcgagatccacgcggcg
agcgaaccgggccgcggctcgaccttcacgctctacctgccgctgcacccggccgagctg
cccccgcaggggtacgcgcagctcgccccggccgtcgagcccaagggtgaactccccgcc
gggcaggagccgcagagcaccgaaccggtgcccacggagccgctgaaggacacccgcaac
gggcccgtctccctcttccgccggcgccgcagggccgcggaggagacggcggccgggacg
gacggcggcgccggccaggcgcagccccgcaccacctcgctgggccggccgctggacgcg
ccgccggaggagcgcccggcgcgcgagccggtcagcttcgacggccagaaggtgctcatc
gtcgacgacgacatccggaacgtcttcgccctcaccagcgtcctcgaacagcacggcctg
gccgtcctctacgccgagaacggccgcgagggcatcgaggtgctggagcagcacgacgac
gtggccgtggtgctgatggacatcatgatgccggagatggacgggtacgcgaccacctcc
gccatccgccgcatgccccagttcgcggggctgccgatcgtcgcgctgaccgccaaggcg
atgaagggcgaccgggagaaggcgatcgagtcgggcgcctccgactacgtcaccaagccg
gtcgaccccgaccacctgctggccgtgatggaggggtggatgagccaggacggctga
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