Streptomyces violascens: HWN34_06290
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Entry
HWN34_06290 CDS
T08842
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
svio
Streptomyces violascens
Pathway
svio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWN34_06290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svio03019
]
HWN34_06290
Messenger RNA biogenesis [BR:
svio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWN34_06290
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QLA56202
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Position
complement(1498023..1499708)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGV
DLILPDFTSIRNRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEDHRERVGPFDCQFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
MDRRLTDLPTFAKLGEEGIDLLLTDSTNAEVPGFVPPERDISNVLRNVFANADKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKALDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGVLTGVPPQ
NIVIAEDGVVVDLVDGRAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFV
VVDSSTGKITGGPHIQARGSGIDDARFADVVPRIQEVLEKSAQDGVVEPHQLQQLVRRTL
GKWVSDHYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcaccctgaactcggccccccgccgaagctgccgaagggcggcctgcgc
gtcacaccgctcggcggcctcggcgagatcggccgcaacatgacggtcttcgagtacgac
ggccgactgctgatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcgtc
gacctgatcctgcccgacttcacctcgatcaggaaccgcctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtcccgtacctgctccgcgagaag
ccggacatcccgctgatcggctcgaagctcacgctcgcgctgatcgaggcgaagctccag
gagcaccgcatccggccgtacacgctggaggtcgcggaggaccaccgcgagcgcgtcggt
cccttcgattgccagttcatcgcggtcaaccactccatcccggacgccctggccgtcgcc
atccgcacccccgcgggcatggcggtgcacaccggcgacttcaagatggaccagctcccg
atggaccggcggctcaccgacctgccgaccttcgcgaagctcggcgaggagggcatcgac
ctcctgctgaccgactccaccaacgccgaggtccccggcttcgtgccgcccgagcgcgac
atctccaacgtcctgcgcaacgtcttcgccaacgcggacaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgccgcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtgcgcaacatgggcatcgcccgcgacctcggt
tacctgaaggtgccgccgggcctcgtcgtcgacgtcaaggcgctcgacgacctgccggac
gacgaggtcgtgctggtctgcaccggttcgcagggcgagccgatggccgcgctctcccgc
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtgatcctggcctcc
tcgctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggtgccaacgtcgtccacaagggcaacgccaaggtccacgtctccggacacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctgcgggccaacgccgaactgggcgtcctcaccggcgtcccgccgcag
aacatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacggccgcgccaagatc
gtcggcaaggtccaggcgggctacgtctacgtggacgggctctccgtcggcgacgtcacc
gagacctcgctcaaggaccgccgcatcctcggcgacgagggcatcatctcggtcttcgtg
gtggtggactccagcaccggcaagatcaccggtggcccgcacatccaggcccgcggttcg
ggtatcgacgacgcgcgcttcgccgacgtcgtcccccgtatccaggaggtcctggagaag
tcggcccaggacggcgtggtcgagccgcaccagctccagcagctggtgcgccgcaccctc
ggcaagtgggtctccgaccactaccgccggcgcccgatgatccttccggtcgtcgtcgag
gtctga
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