Streptomyces violascens: HWN34_08060
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Entry
HWN34_08060 CDS
T08842
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svio
Streptomyces violascens
Pathway
svio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWN34_08060 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svio03021
]
HWN34_08060 (rho)
03019 Messenger RNA biogenesis [BR:
svio03019
]
HWN34_08060 (rho)
Transcription machinery [BR:
svio03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HWN34_08060 (rho)
Messenger RNA biogenesis [BR:
svio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HWN34_08060 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QLA56520
LinkDB
All DBs
Position
complement(1910921..1912981)
Genome browser
AA seq
686 aa
AA seq
DB search
MSDTTDLMGVTADSTVDSAAAPATDASAAPAAGSRRRRGTGLEGMVLAELQQVASGLGIR
GTARMRKSQLIEVIKEAQAGGGAAAPAKSEPEAAKPKRRATSKARTGEAEAAAEPAQKPA
KAAEKKQAKAAEQAEPEAQQDSQQQIDIPGQGAGDEQPAGERRRRRATAEAGSPEQAEAK
QERAAKQQDQKGEGRGDDGSGQQQDGGEGRRDRQNRRDRDRGDRERGDRSDRGERGGRDR
DRRKGDDGGQGGQGGGNRQQQGGGQNRDRHDDFDDDGGGRRGRRGRYRDRRGRRGRDEVG
EPQVNEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAV
RQPKDGERREKFNALVRLDSVNGMAPESGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRI
IDLVSPIGKGQRGLIVAPPKTGKTMIMQAVANAITHNNPECHLMVVLVDERPEEVTDMQR
SVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS
GRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNM
ELKLDRKLADKRIFPAVDVDASGTRKEEILLSGEELGIVWKLRRVLHALDQQQAIELLLD
KMRKTQSNAEFLLQIQKTTPTAGGND
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacagcacggttgattccgctgcc
gcgcccgccacggacgcctcagcggcgcctgcggccggttcccggcggcgccgcggcacc
ggcctagagggcatggtgctggccgagcttcagcaggtcgcctcgggcctcgggatcagg
ggcaccgcgcggatgcgcaagagccagctgatcgaggtcatcaaggaagcgcaggcgggt
ggcggcgcggccgccccggccaagagcgagccggaggccgccaagccgaagcgccgggcc
acctccaaggcccgtaccggcgaggccgaggccgccgccgaaccggcgcagaagcccgcc
aaggccgccgagaagaagcaggccaaggccgccgagcaggcggagcccgaggcgcagcag
gactcccagcagcagatcgacatcccgggccagggcgccggggacgagcagccggccggt
gagcgccgccgtcgccgcgccaccgccgaggcgggcagccccgagcaggccgaggccaag
caggagcgcgccgccaagcagcaggaccagaagggcgagggccgcggcgacgacggctcc
ggccagcagcaggacggcggcgagggccgccgggaccgccagaaccgccgggaccgcgac
cgcggtgaccgtgagcgcggcgaccgttccgaccgcggtgagcgcggcggccgggaccgc
gaccgtcgcaagggcgacgacggcggccagggcggccagggtggcggcaaccgccagcag
cagggcggcggccagaaccgtgaccgccacgacgacttcgacgacgacggcggcggccgt
cgcgggcgccgcggccgctaccgcgaccgccggggccgtcgcggccgcgacgaggtcggc
gagccgcaggtcaacgaggacgacgtgctgatccccgtcgcgggcatcctcgacatcctc
gacaactacgcgttcatccggacctccggctacctgcccggccccaacgacgtgtacgtc
tcgctcgcccaggtccgcaagaacggcctgcgcaagggcgaccacgtcaccggcgcggtc
cgccagcccaaggacggcgagcgccgcgagaagttcaacgcgctggtccgcctcgactcc
gtcaacggcatggcccccgaatcgggccgtgggcggccggagttcaacaagctgacgccg
ctgtacccgcaggaccggctccgcctggagaccgacccgggcgtgctgaccacgcggatc
atcgacctcgtgtcgccgatcggcaagggccagcgcggtctgatcgtggccccgccgaag
accggcaagaccatgatcatgcaggccgtggccaacgcgatcacgcacaacaaccccgag
tgccacctcatggtcgtcctcgtcgacgagcggcccgaagaggtcaccgacatgcagcgg
tcggtcaagggcgaggtcatctcctcgaccttcgaccgccccgccgaggaccacaccacc
gtcgccgaactggccatcgagcgcgccaagcgcctcgtggagctgggccacgacgtggtc
gtcctgctggactccatcacccgcctgggccgcgcctacaacctggccgcgcccgcctcc
ggccgcatcctctccggtggtgtcgactcgaccgcgctctacccgccgaagcgcttcttc
ggtgcggcgcgcaacatcgaggacggcggctcgctgaccatcctcgccaccgcgctggtc
gacaccggctcgcggatggacgaggtgatcttcgaggagtttaagggcaccggcaacatg
gagctcaagctcgaccggaagctcgccgacaagcgcatcttcccggccgtcgacgtcgac
gcctccggcacccgcaaggaggagatcctcctcagcggtgaggagttgggcatcgtctgg
aagctgcgccgggtgctgcacgcgctcgaccagcagcaggcgatcgagctgctgctcgac
aagatgcgcaagacgcagtcgaacgcggagttcctgctccagatccagaagacgacgccg
accgccggcggcaacgactga
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