Streptomyces violascens: HWN34_12140
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Entry
HWN34_12140 CDS
T08842
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
svio
Streptomyces violascens
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svio03016
]
HWN34_12140 (thpR)
Enzymes [BR:
svio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HWN34_12140 (thpR)
Transfer RNA biogenesis [BR:
svio03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HWN34_12140 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QLA57248
LinkDB
All DBs
Position
complement(2839649..2840239)
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AA seq
196 aa
AA seq
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MASPAPRPRLFVAVVPPDAVLAELRRATAALDALPGAGRLRPTEAGGRHVTLAFLGACDP
GRLDGLAARLARAAHRTAPFPLALRGAGHFGDRVLWARPDGDLDALARLADRVRAAATRA
GLPPDAEHAFRPHLTLARVRPGPSLRLAPFAEALAQLAAGPWQADEVRLLRSVPPPGGVP
GARPTYATEGRWPLGG
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggccagccccgcgccccgaccccgcctcttcgtcgccgtcgtcccgcccgacgcggtc
ctcgccgagctgcgccgcgccaccgccgcgctggacgccctgcccggcgccggccggttg
cggcccaccgaggcgggcgggcgccacgtcaccctggccttcctcggcgcctgcgaccct
ggccgcctggacggcctcgccgcacggctcgcccgcgccgcacaccgcaccgcgcccttc
ccgctcgccctgcgcggcgccggccacttcggcgaccgcgtcctgtgggcccgccccgac
ggcgacctcgacgccctcgcccgcctcgccgaccgcgtccgcgccgccgccacccgggcc
gggctgccgcccgacgccgagcacgccttccggccgcacctgaccctggcccgcgtccgc
cccggaccgtccctccggctcgcccccttcgccgaggcactggcccagctggcggccggg
ccctggcaggccgacgaggtccggctgctccgcagcgtgccgccgcccgggggcgtaccg
ggggcccggcccacgtacgcgacggaggggcgatggccgctcggcggctga
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