Streptomyces violascens: HWN34_21920
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Entry
HWN34_21920 CDS
T08842
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svio
Streptomyces violascens
Pathway
svio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWN34_21920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svio03019
]
HWN34_21920
03009 Ribosome biogenesis [BR:
svio03009
]
HWN34_21920
Enzymes [BR:
svio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HWN34_21920
Messenger RNA biogenesis [BR:
svio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWN34_21920
Ribosome biogenesis [BR:
svio03009
]
Prokaryotic type
rRNA processing factors
HWN34_21920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Imm51
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QLA59018
LinkDB
All DBs
Position
5030758..5035113
Genome browser
AA seq
1451 aa
AA seq
DB search
MLGSNDPAEGVDVDNDSPSDTLPPRRRRRAASRPAGPPVAAGSEAEAVAIPAPVAAETEA
PAAEAPSGDEPAARPRSRASRRATAPAGTPAAEAETTVESPAEPQPAAAQPEEPAEAAPA
RPRRRATRRASAPAGAPAGTPDAPAAEAAEPAEPQAPETPAETDEAAPARPRRRATRRAT
APAGTPAAEAETTAPTPAEPQSAPVAAQEQEQAEEAAPARPRRRASRRASAPAGTPGTAE
VVEQAEQTAPAESAAPAEQAAPAEESAAPARKRRRATRPAEAAAPAPVEEEAAEEPAAAE
AESAAPAEEAAPTRTRRRATRRVSAPVSSPVAAEAEGTPEEPTVAEDSSTEASSGDTAEE
SGPRRARRKGGLFSEPDQPKGDREERQEKESGGRGSRRRPAVAVFQAPVFSEPMFQTPER
AAAEAASSAAADTAAPEPEAEEQTPRKRRRRRGEDAPAQEAAPVQEKPAERAPEPEAAED
EAEDEHHGARDDEEHENGERPSRRRRRGGRRRRRGESGDADHEQDEQQEQGSDARTAGED
SAAEDEKDDQAEDEGRDEQRDEDADNGSGSSSSRRRRRRRRRAGDGGGEPEQAASGDDPE
RTVVKVREPRERKKDEPGTGPDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFL
ARREAVERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEA
AFIDIGKGRNAVLYAGEVNFAALGMAHGPRRIESALKSGQSVLVQVTKDPIGHKGARLTS
QVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGILKKIVPEDAGVIVRTAAEGASEEEL
RRDVERLHGQWQEIQKKANASNASSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWK
TVHGYVSKVAPDLVDRLQRWTSETDVFATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAM
IVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDL
VLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQ
PAAGNGGGGKRKKRGKGGQEDTAHTHDHGHDQETEPESFEVETEAEVAAETAEPAALPAP
EFVPDEELYSSAAEAEAAAGSGRRNRRRATRRASAPAGTPRREQAPAAEPEQTVPVAEEP
AAAPEPVVEAPVAEAPAAEAPKEGEAPKRGRRRAVRRASAPAGAPAAAEPVSEPVAEAPA
PAAEVAEAPQATPVAPEPEAEPQPEPAPATAAPARPRRRAVRKASAPTASAEAAVVVVAA
DRPEPAPEAAPAEAPAETPAGEEAEAAPAKKTAARKTAKKATTKKAATKKTTAKKATAKS
AAAGETAPKEAASDEAAPEEAPAKKTTARKTAAKKAPAKKAATAKKAPAKKATTKKAAAK
KTAATAQSDED
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgctcggatcgaacgatcccgccgaaggcgtggacgtggacaacgacagccccagcgac
accctgccgccgcgccggcgacggcgggccgcctcccggcccgccggaccgcccgtggcg
gccgggagcgaggccgaggccgtggccataccggctccggtagcggctgagaccgaggcg
cccgccgccgaggcgccctccggcgacgagccggccgcgcgcccgcgcagccgcgcctcc
cgacgggccaccgcgcccgccggaacccccgccgccgaggcggagaccaccgtggagagc
ccggcggaaccgcagcccgccgccgctcagccggaggagccggccgaggccgccccggcc
cgcccgcgccgccgtgccacccgccgtgcctcggcaccggccggggcgcccgccggtacg
ccggacgcgcccgccgccgaggcggccgagcccgccgagccgcaggcccccgagaccccg
gccgagaccgacgaggccgcccccgcgcggccccgtcgccgtgccacccggcgcgccacc
gcgcccgccggaacccccgccgccgaggcggagaccaccgccccgaccccggcggaaccg
cagtccgccccggtcgcggcccaggagcaggagcaggccgaggaggccgcccccgcccgt
ccgcgccgccgcgcctcgcgccgggcctccgcgcccgccggtacccccgggaccgccgag
gtcgtggagcaggccgagcagaccgcccccgccgagtcggccgctcccgccgagcaggcc
gctcccgccgaggagagcgccgctccggcccgtaagcgtcgccgtgccacccggcccgcc
gaggccgccgcgcccgcgcccgtcgaggaggaggcggccgaggagcccgccgccgccgag
gcggagtccgccgcgccggccgaggaggccgcccccacccgtacgcgccgtcgtgccact
cgtcgcgtttccgcacccgtctccagccccgtggctgccgaggccgaaggcacgccggag
gagcccaccgtggccgaggacagcagcaccgaagcgagcagcggcgacaccgccgaggag
tccggcccgcgccgcgcccgccgcaagggcgggctgttcagcgagcccgaccagccgaag
ggcgaccgcgaggagcgccaggagaaggagtcgggcgggcggggttcgcgccgtcgtccg
gcggtcgccgtcttccaggcgccggtcttctccgagcccatgttccagacgccggagcgc
gccgccgccgaggccgcctcctcggccgccgctgacaccgccgcgcccgagccggaggcc
gaggagcagacgccgcgcaagcgccgtcgccgccgcggtgaggacgccccggcgcaggag
gccgcgccggtccaggagaagccggccgagcgggcccccgagcccgaggccgccgaggac
gaggccgaggacgagcaccacggcgcccgggacgacgaggagcacgagaacggcgagcgc
ccctcgcgccgtcgccgccggggtggccgtcgccgccgtcgcggtgagtcgggcgacgcc
gaccacgagcaggacgagcagcaggagcagggctccgacgcgcgtaccgccggtgaggac
agcgccgccgaggacgagaaggacgaccaggccgaggacgagggccgcgacgagcagcgg
gacgaggacgccgacaacggctcgggctccagcagcagccgccggcgccggcggcgtcgt
cgccgtgccggggacggcgggggcgagccggagcaggccgcctccggggacgacccggag
cgcaccgtcgtcaaggtccgcgagccgcgcgagcggaagaaggacgagccgggcaccggt
cccgacgaggtccagtccatcaagggctcgacccgcctggaggcgaagaagcagcgccgc
cgggagggccgcgagcagggccgccgccgggtgccgatcatcaccgaggcggagttcctg
gcgcgccgcgaggccgtcgagcgcgtgatggtcgtccgccagagcggcgagcgcacccag
atcggcgtgctggaggacgacgtcctcgtcgagcactacgtcaacaaggagcaggccacc
tcctacgtcggcaacgtctacctgggcaaggtccagaacgtcctgccgtcgatggaggcc
gccttcatcgacatcggcaagggccgcaacgccgtgctgtacgccggtgaggtcaacttc
gccgcgctcggcatggcccacggcccgcgccgcatcgagtcggcgctcaagtccggccag
tcggtcctggtgcaggtcaccaaggacccgatcggccacaagggcgcccgcctgaccagc
caggtctcgctgcccggccggtacctcgtctacgtccccgaggggtcgatgacgggcatc
agccgcaagctgcccgacaccgagcgggcccgcctcaagggcatcctcaagaagatcgtc
cccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggggcgagcgaggaggagctg
cgccgcgacgtggagcggctgcacggccagtggcaggagatccagaagaaggccaacgcg
agcaacgccagctcgccgagcctgctctacggcgagccggacatgacggtccgcgtcgtc
cgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggcgacgaggcgtggaag
accgtccacggctacgtcagcaaggtcgcccccgacctggtcgaccgcctccagcggtgg
acctcggagacggacgtcttcgcgacgtaccggatcgacgaggggctcgccaaggcgctg
gaccgcaaggtgtggctgccctcgggcggttcgctggtgatcgacaagaccgaggcgatg
atcgtcgtcgacgtcaacaccggcaagttcaccgggcagggcggcaacctcgaggagacc
gtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgac
ctcggcgggatcgtcgtcatcgactttatcgacatggtcctggagtccaaccgcgacctg
gtcctgcgccgtctgctggagtgcctgggccgggaccggaccaagcaccaggtggccgag
gtgacctcgttgggcctggtccagatgacccgtaagcgggtcggccaggggctgctggag
tcgttctcggagacctgcgtccactgcaacggccggggcgtcatcgtccacctcgaccag
ccggccgccggcaacggcgggggcggcaagcgcaagaagcgcggcaagggcggccaggag
gacaccgcccacacgcacgaccacggccacgaccaggagacggagccggagagcttcgag
gtcgagaccgaggccgaggtcgccgccgagacggccgagcccgccgcgctgccggcgccg
gagttcgtcccggacgaggagctgtacagcagcgccgccgaggccgaggccgccgccggt
tcgggccgccgcaaccgccgccgcgccacccgccgggcctccgcgcccgccggtacgccg
cgccgcgagcaggccccggccgccgagccggagcagaccgtgccggtcgccgaggagccg
gccgccgcgccggagccggtcgtcgaggcgcccgtcgccgaggccccggccgccgaggcg
ccgaaggagggcgaggcgcccaagcgtggccgtcgccgtgccgtccgccgggcctccgcg
cccgccggtgcgccggccgcggccgagccggtgagcgagccggtcgccgaggctcccgcc
ccggccgccgaggtcgccgaggcgccccaggccacgccggtggccccggagcccgaggcc
gagccgcagccggagcccgctccggccaccgcggccccggcccggccgcgccggcgtgcc
gtccgcaaggcgtcggcgccgaccgcgtcggccgaggcggccgtggtggtcgtcgccgcc
gaccgtccggagcccgcgcccgaggcggcccccgccgaggccccggccgagacccccgcg
ggggaggaggctgaggcggcgcccgccaagaagacggcggcccgtaagacggcgaagaag
gccaccacgaagaaggccgcgaccaagaagacgacggccaagaaggccacggccaagtcg
gcggcggccggggagacggctccgaaggaggcggcctcggacgaggcggcgccggaggag
gctcccgccaagaagacgacggcccgtaagacggccgccaagaaggccccggcgaagaag
gccgccacggccaagaaggctccggcgaagaaggccacgaccaagaaggcggcggccaag
aagacggccgccaccgcccagtccgacgaggactga
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