Sander vitreus (walleye): 144516963
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Entry
144516963 CDS
T11640
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
svit Sander vitreus (walleye)
Pathway
svit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144516963 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svit03041
]
144516963 (dhx38)
Enzymes [BR:
svit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
144516963 (dhx38)
Spliceosome [BR:
svit03041
]
Complex C
Other components
Step II factors
144516963 (dhx38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
T2SSE
Toxin_trans_Wo
nSTAND3
nSTAND_NTPase5
Sigma54_activ_2
AAA_16
Microtub_bd
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
144516963
NCBI-ProteinID:
XP_078104831
LinkDB
All DBs
Position
1:23040032..23060675
Genome browser
AA seq
1255 aa
AA seq
DB search
MDEDLSMHRLEGTDPASEVGGLIVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQADASADDRNRKKSKVSSYKDWEEGKSDSESDEEDDDNNKDAKKESRKYRVTGSETP
SNPGGVSEEFRRRHQQREKDRREHGVYASSKEDRNKEKDKERSRDKGRDRRNEKDERESS
HSRGSRSERLERGERSERSQRDGWSDRISRGSKREEPLTPQHRPRDSFTPSRSNWEEDDS
GYASSRLSQWESPSPAPSNKEMDRSERSHRSGRESERRDRSVRGRYPDDTPLPTPSYKYN
EWANDRKHLGSTPRLSQGKGRKEDGVGGIMFDNVDEKDQWEEDQKQADRDWYMMDEGYDE
FHNPFTTTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDE
DFEEDNAAKVHLQVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIIARKGSQLVRKHR
EQKERKKAQHKHWELAGTKLGDIMGVKKTEEKDTPGGKVVGEDGKVDYRTEQKFADHMKD
KTEASSEFAKKKTFLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHE
DGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMTDG
ILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDK
FAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGLIGDILIFMPGQE
DIEVTSDQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETS
LTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQ
SAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILG
ALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGRE
EESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDI
MVQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMG
YTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEISN
MEEEMSMAEEQLRARREEQEKKSITGTVKAVKIVTPGRKEEAPMTPRRTPARFGL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatttgtccatgcataggctggaagggactgatccagcttctgaagttggt
ggactgatagtaaagaaaaagagtgctgcagcagagccccatgtttttcgggcacccact
ccacgcacctccttgctgggcttggatctgctggcagcccagaaaaggaaggagcgtgag
agtaaggagcaggcagacgctagtgccgatgacagaaatagaaagaagtcaaaggtttcc
tcctacaaggactgggaggaaggtaaaagtgactctgaatctgatgaagaagacgatgat
aacaacaaggatgctaagaaggagagtaggaagtatcgtgtgactggctccgagacaccc
tcaaaccccggaggggtcagcgaagagttccgccgcagacaccagcagagagagaaagac
agacgtgagcatggagtctacgcttcgtccaaagaggacaggaacaaagaaaaagacaaa
gaaaggagcagagataaggggagagaccgaaggaatgaaaaagatgagcgagagagcagc
catagccgtggcagccggtcggagcgtttggagcgcggtgagaggagtgagcgctcacag
agagatggctggtccgatcgcatcagccgggggagtaagagagaggaacccctgacgcca
cagcatcgccccagagattctttcactccctcacgctccaactgggaggaggatgacagt
ggttatgccagttcacggctttcccagtgggagtctccgtcccccgccccttctaacaaa
gagatggatcgctcagagcgaagccatcgctccggccgagagagtgagaggagagacaga
tcagtcagaggccgttaccctgacgacacacctctgcctaccccatcatacaagtacaac
gagtgggccaatgacagaaagcatttgggttctacacctcgtttatcacaaggaaaaggt
aggaaagaagatggtgtcgggggaattatgtttgataatgtagatgagaaagaccagtgg
gaggaggaccaaaagcaagctgacagagattggtacatgatggatgagggctatgatgag
ttccacaaccctttcacgaccacctctgaagaatatgtaaagaagagagagcagatcctt
cagaagcagactcaaaaaagaatatctgcccagaagcgacagatcaatgaggataatgag
cggtgggaaaccaaccgtatgctgaccagtggtgtggtgcagaggttggaggtggatgaa
gactttgaggaggacaatgctgctaaggttcacctgcaggttcacaacctggttcctccc
tttctggatggaagaatagtcttcactaagcagccagagcctgtcatccctgtgaaagat
gctacctctgacatggccatcatcgctcgtaaaggcagccagcttgtccgtaaacatcgt
gagcagaaagaacgcaagaaggcacagcacaaacactgggaattggcaggcaccaagttg
ggggatatcatgggtgtcaaaaagacggaggagaaagacacccctgggggcaaagtggta
ggcgaggacggcaaagtagactacagaacggagcagaaatttgcagaccacatgaaagac
aagactgaggccagcagtgagtttgctaagaagaaaacctttctggaacagagacagtac
ctgcctatttttgctgtcagacagcaacttcttaacatcataagggacaatagcatcgtg
attgttgttggggagacgggcagtgggaagaccacccagctgactcagtacctgcacgag
gatggctacactagctatggcatggtgggttgtactcagccccgaagagtggcagccatg
agtgtggccaagagagtcagtgaggagattggcaccaaccttggagaggaggtgggctac
gcaatccgttttgaggactgcacatccgagaaaacattgataaagtacatgacagacggt
atcctgctcagggagtcgttgagggagtcagacttggaccactacagtgctgttatcatg
gacgaggctcacgaacgctccctcaatactgatgtgctgtttggcctgctacgtgaggtt
gtatctcgacgtactgatttgaaactcatagttacctctgcaactatggactcagacaag
tttgctgcattttttggcaacgtacccattttccacattccaggaagaacatttcccgta
gacatcttgtttagcaagactcctcaggaggactacgtggaggcagcagtgaaacaggcc
ctgcagatccatctcagcgggttgataggagacatcctcatctttatgcccgggcaggag
gatattgaggtgacgtccgatcagatcgtggagaggttggaggacttggaaaatgctcct
gctctggccgtgctgcccatctactcccagctgccttctgacctccaggccaagatcttc
cagaaggctccagatggtgtgaggaaatgcattgtcgcaacaaacattgctgagacctcc
ctcactgtggatggaatcatgtttgtcgtggatgcaggatactgcaaacttaaggttttc
aatcctcgcattggaatggatgctctacaggtttatcccatcagccaggctaatgccaac
cagcgttctggcagagcaggacgtacaggaccaggacagtgttacaggctgtacactcag
agcgcctataagaacgagatgctgactaccaccataccagagatccagaggaccaacctg
gccaacgtagtcctgctgttgaagtctctgggtgttcaggatttgctcctctttcacttc
atggatccaccacctgaggacaacatgctcaactccatgtaccagctctggatcttggga
gctctggacaacacaggtgctttgacaccgacggggcgtctgatggtggagtttcccctc
gaccctgctctctccaagatgctgattgtgtcctgcgacatgggttgcagtgctgacatc
cttatcatcgtctccatgctgtcagtgccggccatcttctacagacctaagggtcgtgag
gaggagagtgatcaggtgagggagaagttctcagtcccagagagcgaccacctcacctac
cttaatgtctacatgcagtggaagaacaacaattactccagcatctggtgcaacgaccac
tttatccacaccaaggccatgcgcaaggtacgtgaggtgcgctcccagttaaaggacatc
atggtccagcagaggatgaacctgatttcctgtgggtcggactgggatatcatcaggaag
tgcatctgtgctgcatacttccaccaggctgccaagctcaagggcattggtgaatatgtg
aacgtgaggacaggcatgccatgtcacctccatcctaccagctccctgtttggtatgggc
tacactcccgactacatcatctaccacgagctcgtcatgaccaccaaggaatacatgcaa
tgtgtgactgcagtggatggagagtggctggcagaacttgggcccatgttttacagcatc
aaacatgcaggaaaaagcagacaggagaaccgtcgccgggccaaggaggagatcagcaac
atggaagaggagatgtccatggctgaggagcagctgcgagcgcgtcgagaggagcaggag
aagaagagcatcactggcactgttaaggctgtgaaaatcgtaacaccaggaaggaaagaa
gaggcccccatgacgcctagacggacccctgcccgctttggactgtag
DBGET
integrated database retrieval system
