Sander vitreus (walleye): 144517787
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Entry
144517787 CDS
T11640
Symbol
tncb
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
svit Sander vitreus (walleye)
Pathway
svit04510
Focal adhesion
svit04512
ECM-receptor interaction
svit04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
144517787 (tncb)
04518 Integrin signaling
144517787 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
144517787 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
svit00536
]
144517787 (tncb)
Glycosaminoglycan binding proteins [BR:
svit00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
144517787 (tncb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_TEN
fn3
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_3rd
DUF7949
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Fn3_VIN3
fn3_2
EGF_PEAR1L
NDNF
EGF
FN3_Tor_3rd
SPE9_EGF_3rd
hEGF
EGF_TGFA-like
Motif
Other DBs
NCBI-GeneID:
144517787
NCBI-ProteinID:
XP_078106040
LinkDB
All DBs
Position
5:complement(209293..260328)
Genome browser
AA seq
1602 aa
AA seq
DB search
MGMKGFILRCLTVALLLQLSTAGLVKKVIRHRREALMPKKTQGNVTVPHPDQPVVFNHVY
NINVPSTSLCSVDLDSPSDTELKHKSDPMDMQNSEHMEHTVDGDNQIVFTHRINIPKQAC
GCDNQVPNIKDILNRLEMLESELSSLREQCSSGAGCCGAQVTGEVSTKPYCNGRGNWSTD
TCSCICEPGWKGPNCTEPECPNDCQDQGRCVDGKCECFEGFGGDDCSIELCLLDCGDYGH
CVDGSCLCEEGFIGQDCTQTNCLNNCLGRGRCEDNECVCDEPWTGFDCSELICPNDCYDR
GRCINGTCYCEQGYTGEDCSELTCPGNCNNRGMCVNGQCVCQTGYIGEDCSKVTCPQNCN
ERGHCFNGKCICDPGFEGEDCSILSCPENCSNRGQCINGECVCDIGYQGEDCSELSCLNN
CQDRGRCVNGQCMCNKGYAGEDCNIKTCPKDCMGRGDCVDGKCVCFVGFTGKDCGQLTCP
NDCLDRGHCVNGQCVCHKGFAGEDCSEKTCPKNCLDRGYCVNGNCVCYEGFTGPDCSMLT
CPEDCQNQGHCENGVCVCDEGFIGEDCSGVSPPKDLTVVEVTPETVDVSWENEMRVTEYL
ITYVPTAPGGLEMDMRVPGDQKTTTIRELEPGVEYLISVFAVLNNKRSLPVSARVATHLP
EPEGLKFKSVRETSVEVQWDPLDISFDGWKLIFRNTKEEDGEILNSLGRPETTFEQSGLG
PGQEYEVKLEVVKNNKRGPPASQNVITMIDAPSQVDVRDVTDTTALVTWFQPVAEVDGVS
VSYGPSSNPADRKLVELSSTDTQYHLGGLTPDTQYEVSLSARRGERTSAPVYESFLTDLD
APRDLQTVELTDESITLEWKNSQAPVDNYRIKYGPLSGVEHGELLFPPGPKDTTRAKITG
LRPGTEYGMGVTAVTDERESLPTTTNAVTALDAPKDLRVAEVTETTMMLEWKRPLAKLDS
FRLVYVSADGHRAEEVVPGSSESYILRGLTPGMLYTISIIAERGRRTSAPSTISAPTEEE
KPVVTNVTVSDVSWDSFLLSWSAEDGALEAFLIEVTDAETGAEWQNHTVPADARSLAISG
LSSTTWYRASLYGVFREALLDPVFADTITDVGPPKGFRFSDVTDTSATVHWVVPRARVDS
YRVTYVPAHGGNAKTLTVDGSESQTVLPNLTPGVTYEVTVVAVKGQRESEPGSDSVTTAL
DKPRGLTAVNITDTEALLLWQPAIATVDGYVITYSADSVAPVMERVSGNVVEFEMSSLTP
ATHYTVKVYAVRDLAKSAATTTEFTTDVDAPQDLAASNIQTENGMLTWKPPRADITGYIL
SFESADGVVREVVLSPNAVSYNMAQLSASTEYSVKLQAIAGPKRSRVITTVFTTTGVLYR
HPKDCSQALLNGDTSSDLYTIYLGGDESQPLQVYCDMSTDGGGWIVFLRRQSGKLEFFRN
WKNYTAGFGDMNDEFWLGLSNLHKITAGGQYELRVDLSDKGETAYAQYDKFSISEPRTRY
KVHVGGYSGTAGDSMTYHHGRPFSTYDHDNDIAVTNCALSYKGAFWYKNCHRVNLMGRYG
DNSHSKGVNWFHWKGHEHSIEFAEMKIRPSNFRNLEGRRKRS
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgaaaggcttcatcttacgctgcctgactgtggccctgctcctccagctctcc
actgccggcctggtcaagaaggtcatccgccaccgtagagaggctctgatgcccaagaaa
acccaagggaatgtcactgtgccccaccccgaccagccggtggtgttcaaccacgtctac
aacatcaatgtcccctccacgtctctctgctctgtggacctggactcgcccagtgacact
gagctcaaacacaagagtgacccgatggacatgcagaacagcgagcacatggagcacaca
gtggatggtgacaatcagatcgttttcacccaccgcatcaatatccccaagcaggcatgc
ggctgtgacaaccaggtgcccaatatcaaggacatcctgaaccggctggagatgttggag
tccgagctgtctagtctgagagagcagtgcagcagtggggcaggctgctgtggagctcag
gttaccggtgaagtgtccacaaagccctactgtaatgggcgtgggaactggagcactgac
acctgcagctgcatatgcgagcctggatggaagggccccaactgcaccgaacctgagtgc
cccaatgactgccaggaccagggccgctgtgtggatggcaaatgtgagtgctttgagggc
tttggtggggacgactgcagtattgagctctgcctgctggactgcggtgactatggccac
tgtgtagacgggtcctgcctctgtgaggagggcttcatcggtcaggactgcacccagacc
aactgcctcaacaactgcctgggccgtggacgctgtgaagacaatgagtgtgtttgcgac
gagccgtggacgggcttcgactgctccgaactcatctgtccaaacgactgctatgaccgt
ggacgctgcatcaatggcacctgctactgtgaacagggctacactggagaagactgcagt
gagctcacttgtcctggcaactgtaacaaccgcggcatgtgtgtgaatggccagtgtgtg
tgccagaccggctacattggagaggattgctcgaaggtcacctgtccccagaactgcaac
gagagaggccattgctttaatgggaagtgcatctgtgatccaggatttgagggtgaagat
tgctctatcctctcatgccctgagaactgcagcaacagaggccagtgcattaacggagaa
tgtgtatgtgacataggataccagggcgaagactgtagcgagctctcctgtcttaacaat
tgccaagaccgtggccgctgcgttaacggacagtgcatgtgtaacaaaggctatgctggg
gaggactgcaacatcaagacctgtccaaaagactgcatgggacgaggagactgcgtggat
ggcaagtgcgtgtgctttgtcggcttcactgggaaagactgcggccagctgacctgcccc
aatgactgcctggaccgtggtcactgtgtgaacggacaatgtgtttgtcacaagggtttc
gctggtgaggattgcagtgagaagacgtgtcccaagaactgccttgatagaggttactgc
gtcaatggcaactgtgtgtgttatgaaggtttcaccgggcctgactgctcaatgctgacc
tgcccagaagactgccaaaaccaggggcactgtgagaacggagtgtgtgtttgcgacgag
ggcttcattggggaggactgctctggggtctcacctcccaaggacctgacagtggtggag
gtcaccccagagacagtggacgtgtcctgggagaatgagatgcgtgtgaccgagtacctg
atcacctatgtgccaacggcccctggaggtctggagatggacatgcgggtgcctggggac
cagaagacgaccactattcgggagcttgagcctggcgtggagtacctgatcagcgtcttt
gctgtgctcaacaacaagaggagtcttcctgtcagtgctagggtggctacacatctgccc
gagcctgagggacttaagttcaagtccgtgcgggagacgtcagtggaggtgcagtgggac
ccgttggacatttctttcgatggctggaaactcatcttcagaaacacaaaagaggaagat
ggtgagattctcaactccctcggccgtccagagaccacctttgagcagtcgggcctgggc
cccggccaggagtacgaggtcaagctggaggtggtgaagaacaacaagcgtggaccgcct
gcctcccagaacgtcatcacaatgatcgatgcccccagccaggtggatgtgcgtgacgtg
acagacaccacagcgctggtgacctggttccaacccgtggcagaggtggatggggtcagc
gtctcctacgggcccagctccaaccccgctgatcgcaagctggtggagctgtcctccact
gacacccagtaccacctggggggcctcacccccgacacccagtacgaggtgtcactgtcg
gctcgcaggggagaacggaccagcgctcccgtctatgagtctttcctcacagacctggac
gcccccagagacctgcagacagtggagctgactgacgagagcatcactctggagtggaag
aacagccaggctccggtggacaactaccgcatcaagtatggacctctgtcaggggtggag
cacggagagctgctcttccccccgggacccaaggacaccacccgggccaagatcaccggc
ctgagaccgggcaccgagtatgggatgggtgtgacggcagtgacagatgagcgggagagt
ctgccgacgaccaccaacgcagtcactgccctggatgctcccaaagacctgcgtgttgca
gaagtgacggagaccaccatgatgctggagtggaaacgcccgctggccaaactggactcc
ttcagactggtttatgtgtctgctgacggccaccgagctgaggaggtggtcccaggcagc
tcggagtcctacattcttaggggcctcacacctggcatgctgtacaccatcagcatcatc
gctgagaggggccgcaggaccagtgcacccagcaccatctcagcaccaacagaggaggag
aagcctgtggtgaccaacgtcaccgtcagcgacgtatcgtgggacagcttcctcctgtcc
tggtctgctgaggacggggcattggaggcctttctgatcgaggttaccgatgcagagacg
ggcgctgagtggcaaaaccacacggtgcccgccgatgctcgcagcctggctatctctggc
ctctcctccaccacctggtacagggccagtctgtacggggtgttcagggaggccctctta
gacccggtctttgcagacaccatcacagatgtgggtccacccaagggtttccgcttctct
gatgtcaccgacacatcggccaccgttcactgggtggttcccagagctcgggtggacagc
tacagggtcacctatgtgcctgctcatggaggtaatgctaagactctgacagtggacggc
tcggagtctcagactgtgctgcccaacctgacccccggggtcacatatgaggttaccgtg
gtcgctgtcaagggtcaaagggagagtgagcctggatcagacagcgtcaccaccgctctg
gataaaccccgtggactgactgcagtcaatatcacagacactgaggctctgctgctctgg
cagcccgccattgccactgtagacggctacgtcatcacctacagcgcagactcagtggct
ccagtgatggagcgcgtgtcaggaaatgtagtggagtttgagatgagctctctgacgcct
gccacgcactacactgtgaaggtctatgctgtgagggacctggccaagagtgcagccacc
accactgagttcaccactgacgtggacgcccctcaggacctggcagccagtaacattcag
acagagaacggtatgctgacatggaagccacctcgcgctgacatcaccggatacatcctc
agctttgagtcggcagacggcgttgtccgtgaggtggtcctgagtcccaacgctgtctcc
tataacatggctcagctcagcgcctccacagagtattcagtcaagctgcaggccatcgct
ggtcccaagagaagccgagtcatcactactgtcttcaccaccactggtgtactgtacaga
caccccaaggactgctcccaggcccttctgaatggagacacctcatcagacctgtacacc
atctatctgggtggggatgagagccagcccctccaggtctactgcgacatgagcactgat
ggaggtggatggatcgtgttcctccgacgacagagtggtaaactggagtttttccgcaac
tggaagaattacacagctggctttggtgacatgaacgatgaattctggctgggtctttcc
aacctgcataagatcacagctggaggtcagtacgagctgcgtgtggacctgagcgataag
ggagaaacagcctacgcccagtatgacaagttctccatctctgaaccccggacccgctac
aaagtccacgtaggaggatacagtggaacagcaggtgactctatgacgtaccatcacggg
cgtccattctccacttatgaccacgacaacgacattgctgtcaccaactgtgccctgtcc
tataagggagctttctggtataagaactgccaccgcgtcaacctcatgggacgatatgga
gacaacagtcacagcaagggggtcaactggttccactggaaaggccacgagcactccatt
gagtttgctgagatgaagatcaggccatccaacttcaggaacctggaaggaagaaggaaa
cgatcataa
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integrated database retrieval system
