Sander vitreus (walleye): 144526937
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Entry
144526937 CDS
T11640
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
svit Sander vitreus (walleye)
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svit03019
]
144526937 (htt)
04131 Membrane trafficking [BR:
svit04131
]
144526937 (htt)
03029 Mitochondrial biogenesis [BR:
svit03029
]
144526937 (htt)
Messenger RNA biogenesis [BR:
svit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
144526937 (htt)
Membrane trafficking [BR:
svit04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
144526937 (htt)
Mitochondrial biogenesis [BR:
svit03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
144526937 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
144526937
NCBI-ProteinID:
XP_078120824
LinkDB
All DBs
Position
2:28726686..28760975
Genome browser
AA seq
3183 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
SPESRTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELY
KEIKKNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEETVQETLAAA
MPKIMAALGHFANDGEIKVLLKSYVANLKSSSPTIRRTAASSAVSVCQHSRRSSYFYTWL
LNVLLGLLIPVDEEHPSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMRKEADVQPTP
EQLLQVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITTGSILHGTVFRQDA
ESRARSGSILELIGKMLSGEEDGLEDDAERTEDTAGAFTAAVVGADGSSAAQVDIITEQP
RSSQHTLQPGDSVDLSASSEQGGGGGGTSASDTPESPNDNEEEMLSRSSSGGANITPETA
DYTTPEMEGGPLGVGGTLLGTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELVLDGSESQY
SGMQIGTLQDEEDEGAAPSSQEEPPEPILQSALALSKPHLFDGRGHNRQGSDSSVDRFIT
KDEPAEHEPDNKPSRIKGPIGHYTDQGVEPLVHCVRLLAASFLLTGRKNGLTPDKEVRVS
VKALAVSCVGAAAALHPEAFFNSLYLEPLDGIPVEEQQYISDILGLIDHGDPQIRGATAI
LCAAIIQAALTKTRYNIHTWLASVQSATGNPLSLVDLVPLLQKTLKDESSVTCKMACSAV
RHCIMTVCSSTLSELGLQLLINLLALRDSSYWLVRTELLETLAEMDFRLVHFLERKTETL
HKGDHHYTGRLRLQDRVLNDVVICLLGDDDPRVRHVAASAVSRLVSRLFYDCDQGQVDPV
VAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSNNVSDVTIENNLSRVVTAVS
HAFTSSTSRALTFGCCEALSLLALNFPVCTWSTGWHCGYVSSSSSFSSRSSLNRSRGRAL
SVSQPCSAPASSTSSSAPDTERRTLTVGMANMVLSLLSSAWFPLDLSSHQDALLLSGNLL
AAVAPKCMRNPWAGEEDGTSGSTNASGGPNKMEEPWAGLSERSLVAMLEQLFSHLLKILN
ICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKDVAEPSAAPMSPKKSNEVNTGR
PADSTGSTAVNKSTTLGNFYHLPPYLKLYDVLKATHANYKVTLDLHSSQEKFGGFLRATL
DVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLASQCEGV
LSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSGWF
DVMQKASNQLRSNIANATRNRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDL
LAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLSYERYHS
KQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQKEVV
VSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPLIAKQQMHLDSPEAL
GVLNTLFETVAPSSLRPVDMLLKSMFTTPVTMASVATVQLWVSGILAVLRVLISQSTEDI
VLSRVHELSLTPHLLSCHTIRRLHQQSPSPCDPPTADELGIREANGEAQKALPEETFARF
LLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKSGMFRRITAAASRLL
KGEGGGGQTSTEAGLFYPLEGLNSMVQCLITTHPSLVLLWCQVLLIIDYTNYSWWAEVHQ
TPRRHSHSCTKLLSPHSSGKGEEDKPETRLAMVNREIVRRGALILFCDYVCQNLHDSEHL
TWLIVNHVRDLINLSHEPPVQDFISAVHRNTAASGLFIQAIQSRCDNLSTPTMLKKTLQC
LEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLAETLQNSIAQLPVEEL
DRIQEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPTPPVTSHPLDGDPPPSPELVIADR
EWYVALVKSQCCLRGDVSLLETTELLTKLPPTDLFNIMSCKEFNLSLLCPCLSMGMQRLA
RGQGALLLETALQVTLERLAGVTGSLPVPHQSFLPPAQPQPYWSQLAEVYDEPSFYPRVL
SLCRALSQYLLSVSQLPPSLHIPSDKEHLITTFTCTAAEVVAWHLLKNQLPLSVDLQWAL
SCLCLALQQPCVWNKLSTLEYTTHTCSLIYCLRLIIVAVAVSPGDQLLHPEKKKRKAERD
AEGEEVDSAHADHLCEWQACEIMAELVDGLQSIFALGHHRNRAFPAFLTPTLRNIVISLS
RLPLVNSYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDVFREFLYRINTLGWSS
RTQFEETWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLPTA
GNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVHTHHPYHAWDP
VPSLSAASAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWGE
DEEDEADTPAPTSPPMSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPSNRRTPTILV
SEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAICKAAAVLGMDK
AIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTVSEYLLSNLRAI
AHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQLCGVMVSASEDSTPSVIYHC
VLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTAVLASGSDV
TGVRGQVDSGSAVAEAVGVTAGHVGFSSGKEKASPAGRPAHSDPQAPDSESIIVAMERVS
VLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNLQPYPQFMATVVYKV
FQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISR
MGCSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGSPYHQLLGCLQSIHQD
TSL
NT seq
9552 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaattgatgaaggcctttgagtctctgaagtcattccagcagcaa
cagggaccaccgaccgccgaggagcttgtccagaggcagaaaaaggaacaggctaccaca
aagaaggacagggtcacccactgcctgacaatatgtgaaaacattgtggctcagtctctg
agtcctgagagcagaacatctccagagtttcagaaactgctgggcattgccatggagatg
ttcctgctctgcagtgatgacagcgaatcagatgtccggatggtagccgatgagtgcctg
aacaaaatcatcaaagcactgatggactccaacctgcctagactgcagctggagctctat
aaagaaattaaaaagaacggtgcctctcggagtttgagggcagctttgtggaggtttgct
gagcttgctcacctcattagacctcagaaatgcagaccctacctggttaacctgttgcca
tgcctctcccgaatcaccaagcggcaggaggagacagtacaggagactctggctgctgca
atgcccaagatcatggccgccttgggacacttcgctaatgacggcgagatcaaggtgctg
ctgaagtcatatgtggccaacctgaagtccagctcccccaccatcagacggactgcagcc
agctcagccgtcagtgtgtgccaacactccagacgcagcagctacttctacacctggctc
cttaatgtgctgctgggtctgctgattccagtggatgaggagcaccccagccacctaatt
ctgggggtgctgttaacccttcgctacctgatgcctctgctgcagcagcaagtcaacacc
accagcctcaaaggaagctttggagtcatgaggaaggaggctgatgtacagccaacacct
gaacaactgctacaggtgtacgagctgactttgcactacacacagcactgggatcacaat
gtggtcacggcagcgctggagctcctgcagcagatgttcaggactcccccgccagagctt
ctgcacatgctcatcaccaccggcagcattctacatggcaccgtgttccgccaggacgct
gagagccgtgcgcgctccggcagcatcctcgagctcattggtaaaatgctctctggggag
gaggatgggttggaggatgacgctgagagaacagaggacaccgctggtgccttcacagcg
gcagttgttggtgcagatggctcctccgcagcccaggtggacatcatcacagagcagccg
cgctcctcccagcataccctgcagcctggagactcggtggacctcagtgcctcctcagag
cagggcggcggcggaggcgggacatctgcatcagacactcctgagtcacccaatgacaac
gaggaggaaatgctgagtcggagctccagcggtggggccaacattactcccgagacagcg
gactacactacgccagagatggagggagggcccttaggtgtaggtgggactctgctaggc
actaacgatcgctcacttccacccagcgactcttcccagaccaccacggaaggaccggac
tccgctgtcaccccttcggacgtagcagaactggtgctggatggcagtgagagccagtac
tctgggatgcagatcgggacattacaggatgaagaagatgaaggtgctgcaccttcctcc
caagaagaacccccagaaccaatcctgcagtcagcactggctctgagcaagcctcatctc
tttgatggccgaggtcacaaccggcagggttcagacagcagtgtggaccgcttcataaca
aaggacgaacctgctgaacacgaacctgacaacaagccatcacggataaagggtccaatt
ggacattatacagaccagggggtggagccactggtgcactgtgtaaggcttcttgcagct
tcattcttactgacgggaagaaaaaatggtctgacccctgacaaggaggtgcgagtgagc
gtgaaggctctggcagtcagctgtgttggggcagcagcagcgctgcatcctgaagccttc
tttaattccctctacttggagccgctggatggcattccagtagaagagcagcagtatatc
agtgacatcctgggtctcatcgaccatggggacccccagatcagaggtgccacagccatc
ctctgtgcagccatcatacaagccgcactcaccaaaacgcgttacaacatacacacctgg
ctggccagtgtgcagagtgcaacaggtaaccctctgtccctggtggacttggtccctttg
ctccagaaaactctgaaagatgaatcctccgtcacctgcaagatggcttgctctgcagtg
aggcactgcatcatgactgtgtgcagcagtaccctgagtgagctcggcctgcagttgctg
ataaaccttcttgctctgagggactcgtcctattggcttgttcgcactgagctcttggag
accctggctgagatggacttccggttagttcatttcctggagaggaaaacggagactttg
cacaaaggggatcatcactacactgggcggctgcggctacaggaccgagtcctgaatgat
gtggtcatctgtctgttgggagatgatgaccccagagtccgacacgtggcagcctctgct
gtcagcaggctagtttccaggttgttctatgactgtgaccagggtcaagtggacccagta
gtggctattgcccgggaccagagttcggtctacctgcagctgctgatgcatgagacccaa
cccccctcccagttcacagttagtacaatcacaaggacgtacaggggctacaacttgtcc
aacaatgtgtctgatgtgacaatcgagaacaatttgtccagagtcgtcactgccgtctcc
cacgctttcacctcctctacctccagggccctgacttttggctgctgtgaggctttgtcc
ctcctggctttaaacttcccagtgtgcacttggagtacaggctggcactgtggctatgtc
agctccagtagcagcttttcttcccgctctagtctcaaccgcagcaggggcagggccctc
agtgtgtcccagccatgcagtgctccagcctcttcaacctcctcatctgcaccagacacc
gagcggaggactctgaccgtaggaatggccaacatggtcctctccttactctcttctgct
tggtttccactggatctctcttcacaccaggatgcacttttgctttctggcaatctgctt
gctgctgtggctcctaaatgcatgcgcaacccctgggctggagaggaagacggcactagt
ggtagcacaaacgccagtggaggcccaaataagatggaggaaccctgggccgggttgtct
gagcgttccctggtggccatgttggagcaactcttctctcacctactgaagatcctcaac
atctgtgcccatgtgctggatgacacaccacctggaccagcggttaaggccaccctcccc
tccctgagcaacaccccctccctcagtcccatccggagaaaaggcaaggagaaggatgtc
gctgagcccagtgctgccccaatgagcccaaagaaaagcaatgaggtcaacacaggcagg
ccagcagacagcactgggtcaacagctgtaaacaaatctaccacccttggcaacttctac
caccttccaccctacctcaagctctatgatgtccttaaagctacacacgccaactacaag
gtaacgctggacctccacagtagccaggagaagtttggaggtttcctgcgtgccactcta
gatgttctatcccagctcctggagctggccacactacatgacatcagcaagtgtgtggag
gaaatcttaggctaccttaagtcctgcttctccagggaaccaaccatggctacagtttgt
gtacaacagctgttgaagaccctgtttggcaccaacctggcgtctcagtgcgagggcgtc
ctcagtggacccagccgttcccagggcaaggctctccgtcttggatcgtcgagtctgcga
ccaggcctttaccactactgcttcatggcgccatacactcacttcactcaggctctcgcc
gatgccagtctccgtaacatggtgcaggctgaacaggagcacgacacctctggatggttt
gatgtgatgcaaaaagcttcaaaccagctgaggtccaacattgcaaatgcaacacgcaac
agaggagacaagaatgccatccacaaccacattcgtctgtttgagccgctagtgatcaaa
gctttaaagcagtacactaccagcacgtctgtggccctgcagagacaagtactggacctg
ctcgctcaactcgtgcagcttagggtcaactactgcctgctggactccgatcaggtgttc
ataggctttgtcctgaagcagtttgagtacattgaagtgggacagttcagagattcggag
gccatcattcccaacatctttttcttcctggttctgttgtcgtatgagcgttaccactcc
aagcagataatcagcatccccaagatcattcagctgtgtgacggcataatggcgagcggc
aggaaagctgtcacacatgccatcccagccttgcagccaatagtccacgacctgtttgtg
ttgaggggctcaaacaaagcagatgcaggcaaagagctggatacacagaaagaagtggtg
gtctccatgctgctcagacttgtgcaacaccatcaggtgttggagatgttcatccttgta
ctgcagcagtgtcacaaagagaacgaggacaagtggaagagattgtccaggcagattgct
gacgtcatacttcccttgattgctaagcagcagatgcacctggactctccggaggcgttg
ggagtgttgaacactctgtttgagactgtggcgccctcctcgctcagaccagtagacatg
ctgctcaagagtatgttcaccaccccggtcaccatggcatcagtagctacagttcagctg
tgggtgtctggtatcctggcagtgctcagggtacttatatcccagtccacggaggacatt
gtcctgtcacgggtccacgaactctccctcaccccgcatctcctctcctgccacacaatc
cgtcgcctgcatcagcagagcccctccccatgtgacccacccactgccgacgaactcggc
atccgggaagctaatggcgaggcacaaaaagccctgcctgaggaaacctttgccaggttt
ctgctccagctggtaggagtgttgctggatgacatttcctccagacaggttaaagtggac
attacagagcagcaacacactttctactgtcagcagctgggcacactgctcatgtgtctc
atacatgtcttcaaaagtgggatgtttcgcaggatcacggctgcagcgagccgtctcctg
aagggcgagggtggaggtggacagacgagcaccgaggccggcctgttttaccccttagag
ggtctgaacagcatggtgcagtgcctgatcaccacccacccctccttggtgctgctgtgg
tgccaggtcctcctcatcatcgactacaccaactactcctggtgggctgaggtgcaccag
acacccaggagacacagccactcgtgcacaaagctgctgagtcctcactcctcagggaaa
ggagaagaggacaagcctgagactcggttggctatggtcaaccgagagatcgtgcgcagg
ggagccctcatcctcttctgtgactatgtgtgtcagaaccttcatgactcggagcatctg
acctggctgattgtcaaccacgtgcgtgacctcatcaacctttcccatgagcctccagtg
caagatttcatcagcgctgtgcaccgcaacacagctgccagtggtctcttcattcaggcc
atccagtcccgctgtgacaacctcagtactcctaccatgttgaagaagactctgcagtgt
ttggaaggcatccacctgagtcagtctggctccctgctgatgctgtatgtggacaagctg
ctcagtacacccttcagggttctagctcgcatggtggacacactggcgtgtcgcagggta
gagatgctgttggctgagacactacagaatagtatagctcagctgcctgtggaggaacta
gacaggatccaggaatacctccagaccagtggcctggctcagaggcatcagaggttctac
tccctgctggacaggttcagagccactgtcgctgacaccagcagccccacacctcctgtg
acatcacacccattagatggggatccaccaccttcccctgagctggtcattgcagatagg
gagtggtacgtggctctggtgaagtctcagtgttgtcttcgtggagatgtttccctgttg
gagacgacggaactcctcaccaaactacctcccactgacctctttaacatcatgagctgc
aaggagttcaacctaagcctgctgtgcccatgcctaagtatgggcatgcagcggttagca
cggggtcagggggcgctcttgttggagacagccttgcaggtgaccctagagcggctcgca
ggggtcaccgggtcacttcctgtcccgcaccagtccttcctgccacccgcccagccacag
ccctactggagccaactggctgaagtgtatgatgagccaagtttctaccccagggttttg
tcgctctgcagagctctgtcccagtacctgctgagtgtaagccagcttcctccctcacta
catatcccctctgacaaggaacacctcatcaccactttcacctgcactgccgctgaggtg
gtagcgtggcatctcctcaagaaccagttgcccctgagtgtggacctgcagtgggctctg
tcctgcctgtgtctggccctgcagcagccctgcgtctggaacaagctctcgaccctagag
tacactacacacacctgctccctcatctactgcctacgcctgattattgttgcagtggct
gttagtcctggtgaccagcttctgcatccagagaagaaaaaaaggaaggcagagagagac
gccgaaggagaagaagtggactcggcacatgctgaccacctgtgcgagtggcaagcatgt
gagatcatggcggagctggtggacggcctgcagagcatctttgcccttggtcaccataga
aaccgtgcattccctgcttttctcacaccaaccttgcgcaacattgtcatcagtctgtcc
cgactgcctctggtcaacagctacacccgagtacctccactggtctggaaactgggctgg
tcccctcagccaggaggagagtacggcacaacgctgcctgagatccctgtcgacttcctg
caggaaaaggatgtcttcagagagttcctctaccgcatcaacacactgggctggagcagc
aggactcagtttgaggagacctgggccacactgctgggggtgctggtcacccaacccatc
actatggaccaggaggaggagacgcagcaggaggaggacttggagcgtacccagttgaat
gtgttggcagtgcaggccatcaccagcctggtgctgagtgccatgaccctgcccactgct
ggcaaccctgcagtcagctgtctggaacagcagccccgcaacaagagcctcaaagcccta
gaaactcggtttgggaggaaacttgcagtgatcaggggcgaggtggagagagagattcag
gctctcgtgtctaagagagacaacgttcatacacaccatccgtaccacgcctgggatcct
gtaccctcgctgtcggcagcctcagctgcaggcacgctgatcagccatgagaagctgcta
cttcagatcaacacagagagggagatgggcaacatggactacaaactgggacaggtctcc
attcactcagtgtggttaggtaacaacatcaccccactgagggaggaagagtggggtgag
gatgaggaagatgaagcagacactccagcccccacctccccacccatgtctcctatcaac
tctaggaagcatcgtgccggtgtggacattcattcatgttcccagtttctgctggagctc
tacagccagtggctgatccctggctccccgagtaacaggaggacaccgaccatcctcgtc
agtgaagtggttcgatcgctgctggcggtgtcagacctgttcacagagcggaaccagttt
gacatgatgttctccaccctgatggaactgcagaagctccacccgccagaggatgagatc
ctcaatcaatacctggtgcctgccatctgcaaggctgctgccgttctgggcatggacaaa
gcaatagcggagcctgtgtgtcgcctgttggagaccaccctgcgcagcacccacctgccc
agccgcatgggggctctacatggagtgctgtatgtgttggagtgtgacttgctggatgat
accgccaaacagctcatccccaccgtctcggagtaccttctgtccaacctcagggctatc
gctcactgtgtgaacctgcataaccagcagcatgtgttggtaatgtgcgcagtggctttc
tacatgatggagaactaccctctggatgtaggagccgagtttatggctggaattatacag
ttgtgtggtgtgatggtgtcggccagcgaggactccactccctccgtcatctatcactgt
gtgctgcgcggtctggagcgcctcctgctgtcagagcagttgtcacgtgtggacggagaa
gcgctggtcaaactcagcgtggacagagtcaacatgccgtcgccgcacagagccatggcc
gccctgggcctcatgctcacctgcatgtacactgcggtgcttgcgtcgggttcggacgtg
accggggttagaggtcaggttgactctggctctgccgtagcagaggcggtgggcgtcacg
gcaggtcatgttggtttctcctcaggcaaggagaaagccagccctgccggtcgccccgcc
cactctgaccctcaggcccccgacagcgagtcgatcattgttgccatggagagggtctct
gtgctcttcgacaggatccggaaaggtttacctagcgaagctcgggtggtgtccaggatt
ctgccccagtttctggacgacttcttcccgccgcaggacgtcatgaacaaggtcatcgga
gagttcctgtccaatctgcaaccttacccacaattcatggccacggtcgtctacaaggtt
tttcagacacttcatgcaacaggccagtcttctatggtgcgagactgggtgctgctgtcc
ttgtccaacttcactcagcggacaccggtggccatggccatgtggagcctctcctgtttc
tttgtctccgcgtccacctcccagtggatctcagccctactgccacacgtgatcagccgg
atgggctgtagtgaggtggtggacgtcaacctgttctgtctggtggccatggacttctac
cggcaccagattgacgaggagctggaccgcagggccttccagtccgtctttgagactgtg
gcctcaccaggcagcccttatcaccagctgctgggctgtctgcagtcaatccaccaggat
acatcactctga
DBGET
integrated database retrieval system
