Sander vitreus (walleye): 144528402
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Entry
144528402 CDS
T11640
Name
(RefSeq) putative ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
svit Sander vitreus (walleye)
Pathway
svit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
144528402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svit03019
]
144528402
03036 Chromosome and associated proteins [BR:
svit03036
]
144528402
Enzymes [BR:
svit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144528402
Messenger RNA biogenesis [BR:
svit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
144528402
mRNA degradation factors
5'-3' decay
Decapping complex
144528402
Chromosome and associated proteins [BR:
svit03036
]
Eukaryotic type
Gene silencing
piRNA pathway
144528402
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
144528402
NCBI-ProteinID:
XP_078123071
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All DBs
Position
14:8259252..8266072
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENIGPVVMGLNKQNGQLRGQTKPASVQPAPTTQGKTLGAPQIAGGAAQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHASGADCDVEEIEE
KPARQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaacattggcccagttgtcatgggactgaacaagcagaat
gggcaactccgaggacagactaaaccagcgtctgtccagccagcacccacaactcaagga
aagactttgggtgcaccccagatagcaggcggtgccgctcaggacggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctccctcccaaagacaacagggtcaaaact
tcagatgtgacgtccaccaaggggaatgaatttgaagattactgtctcaagagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgtgctaagaatggaacagggaaaagt
ggagcctatctcattccactgctggagagaatagacctgaaaaaggaccacatacaggca
cttgtcatggtgcccacccgtgagctggcactgcaggtaagccagatctccatccagatc
agcaaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtttggatgagactgtgcatgtggtcatcgccacgcctggtaggatcctg
gacttgataaagaagggagtggcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttcccaatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctatgagataaacctgatggaggagctgactctgaag
ggcataactcaatactacgcctacgtcacagagaggcaaaaagtccactgcctcaacaca
ctgttctccaggcttcaaatcaaccagtcgattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcttgcttctacatccatgctaaa
atgatgcaggaatacagaaacagagtgttccacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctcttcaccaggggtattgacatccaggctgtcaatgtagtcatc
aacttcgacttccccaaaaatgctgagacttacctccatcgtattggcagatcagggagg
tttggtcaccttggcttggccatcaacctgatcacgtcggaggaccgcttcaacctgaag
gccatcgaagaccagctggtgactgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggctgagttccacgcgtccggcgctgactgtgatgtggaggagattgaggag
aaaccagcacgccaacaggacagcacctaa
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