Sander vitreus (walleye): 144529432
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Entry
144529432 CDS
T11640
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
svit Sander vitreus (walleye)
Pathway
svit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
144529432 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svit03019
]
144529432 (skic2)
Enzymes [BR:
svit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
144529432 (skic2)
Messenger RNA biogenesis [BR:
svit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
144529432 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
144529432 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
144529432
NCBI-ProteinID:
XP_078124648
LinkDB
All DBs
Position
14:10416240..10437115
Genome browser
AA seq
1247 aa
AA seq
DB search
MDRMNEPPAGPVDLPLSLLEMGCSGRFELITHLIPNQPLPPQSTLPHGLPPTSLSLETEV
EKQFLRDAAWLPIHDTDFAFQKFLKVTQRKVNVDSLINCSPSSLHSGVSVVRDPTTGMLL
DFTEVLLENTSLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIQKKSELE
EDIDFENDLLRIPPGLKVGMDFTDKDAKIAKAEVNLMSLLSTLNDITYLQPEAEEKEEGK
GSKEAPKLPRTNSLEDLGIKDVVSSSTPSEKGKDDKSKPKENSEENKKWAIPVNITSPCD
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSDWIGRIKKKH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLMDATGNFLTKGYYAAVDAKKERTSKHAQ
SFGTKSTSHNTSASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVQEMSDLRVMMLGKPTTLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISELKKMVSSLPPLDTEGQLSDMLPYYHTVTELRTTTEALQCAILESVNGL
KALSVGRVVLVNNKQHLNALGVILQVSSDSVNRTFTALVICEKGNEEGEGEGKANNNTFP
HFYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFRLDPPGQ
AISTATQELLRLAEANPSGIATLDPVNDLQLKSVDVVEDSMRVRVLQDIIREFNCIHSPT
FAEQFALVKERMSMQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGR
VACQISSHELLLTELLFENVLSPLAPEDSAALLSCLVFTQNTQVEPHITNTLKEGIDRVL
SVAKRIGELQRDCGISQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRC
IQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatgaatgagccccccgcgggccccgtggacctgccgctgtccctgctggag
atgggatgctctggcaggtttgagctcatcacacacctcatacctaaccagcctttacct
ccacagagcacactccctcatgggcttcctcccaccagccttagcctggagacagaagta
gagaaacagtttttgcgggacgcggcctggcttccaattcacgacacagactttgccttc
cagaagtttctcaaggtgactcagagaaaagttaatgttgattctctaatcaactgcagt
ccatcttcacttcactccggtgtctctgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttactggagaacacaagcctgtcagcaaagaactcgctttcatta
caacgccaacccgggcctccttcagagagccttcgaggaagcaacaccaactaccccttc
ctccccggaggaatggaggagcttactctggaccaaatccagaagaaatctgagctggag
gaggatatagactttgagaatgatttactcagaatcccacctggacttaaagtggggatg
gacttcactgacaaagatgccaagattgcaaaggcagaggtcaacctcatgtccctcctg
tccacattgaatgacatcacttacttgcaacctgaggcagaggagaaagaggaaggcaaa
ggaagtaaagaagctcccaaactacccagaacaaacagccttgaagacctgggcatcaag
gatgttgtgtcatcctcgactccctcagagaaaggaaaggatgacaaatcaaagccaaaa
gagaactccgaggaaaataagaaatgggccatccctgtcaacataacttcaccctgcgat
gatttctataaacgtatccccaacccagctttcaagtggccgtttgagctggatgtcttc
cagaaacaggctgtgctgagactggaggctcacgactctgtgtttgtagccgcacacaca
tcagctggcaaaacagtggtggccgaatacgccatcgctctctcacagaaacacatgaca
aggaccatctacacctctcccatcaaagccctgtccaatcagaagttcagagactttaaa
aacacctttggagatgttggacttctgacgggcgacgtgcagcttagtcctgaatcttca
tgcctcatcatgaccactgagatcctccggtccatgctttacaacggatcagaggtcatc
agagacttggagtgggtgatctttgacgaggttcactacatcaacgatgctgagagaggg
gttgtgtgggaggaggttttgattatgctccccgatcacgtcagtatcattctccttagc
gccacagttccaaatgctctggagtttagcgactggatcggtcgtataaagaagaagcat
atttacgtgatcagcacaatgaagagacctgtgcctttggagcattatctgtacactgga
aacagcaccaagactcagaaagagatgttcctgctgatggatgctacaggaaacttcctc
actaaagggtactacgcagctgtcgatgccaaaaaggagcgcaccagcaaacatgcccaa
tcctttggcacgaagagtacttctcacaacacctcagctagtcaggaccgatcggtgtgg
ctcactctcctgcacttcctgtcccagcggcagcagacgcctgtggttgcgttcacgttc
tctcggacacgatgtgacgacaacgcccgctcgctggactccatggacatgaccacctcc
atagagaaggccgagatccactctttcttccagaagagcctgagtcgcctccgaggagga
gaccgacagctgcctcagatcttggtcatgagggacctgttgaagaggggaatagcggtc
catcatagcgggatcctgccgattctaaaggaggtcattgagatgctcttctcccgaggt
ctcgtaaaggtgctgtttgccacagagacatttgcaatgggagtaaacatgcctgccagg
actgtggtgtttgacagcatcaggaaacacgacgggaccggctttagaaatctgctgcca
ggtgagtatattcagatggcgggcagagcaggcaggagaggtctggacgccacaggcact
gtcatcattctgtgtaaagccggagttcaggagatgtcagatctgcgtgtgatgatgctg
ggtaaacccaccacactccagtcccagttcagactgacctacacgatgatccttaacctg
ctgcgagtcgaagccctccgcgtgaccgacatgatgaggaggagcttttctgaaagccac
agggacactcaggcccatgaaaagaggatcagcgagttgaagaagatggtgtcttctctg
cctcctctggacacagaaggccagctgtccgacatgttgccctactaccacaccgtgacg
gagctacgaaccaccactgaggccctccagtgcgccattctggagtctgtcaacgggctg
aaagctctgtctgtgggtcgagttgtgctggtgaacaacaagcagcatcttaacgccttg
ggagttatcctacaggtgtccagtgactctgtaaatcgcaccttcacagctctcgtcatc
tgtgagaagggcaacgaggaaggagaaggggaaggaaaagcaaacaacaacactttccct
cacttctacaacacagctctctttatacctgaaggcccttgcagccacacagtgcagaag
ttgaagcttcaggacatctcagccatcacagtaaaaaccctcaaagtgattccagacagg
atcatcgacaactacaacaagaggcaacagccgcgattcaggcttgaccctccgggccaa
gccatctccacggcaacccaggagctcctgcggttggccgaggccaaccccagcggcata
gcgaccctcgaccccgtgaacgacctccagttgaagagcgtcgatgtggtggaggactcc
atgagagtccgtgtgctgcaagacatcatcagagagttcaactgcatccactcgcccacc
ttcgcagagcagtttgctcttgttaaggagaggatgagtatgcaggaggagctggaccgg
ctgcttttcctggtgtcggaccagtctctgtctctcctgcctgaataccaccagaggatc
aaggtgctgcagtccctccagtacgttgacagcagcggggcggtgcagctgaaaggccgc
gtagcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtc
ctgagcccgctggcgcccgaggacagcgccgctctgttgtcctgtttggtcttcacacag
aacacacaggtggagccgcacattaccaacacactaaaggagggcatcgatcgggtgctg
tcggtggccaagcgtatcggagagctgcagagggattgtgggatatcacagacagctgag
gagtttgttggccagttcaagtttggcctgacagaggtggtgtactgctgggccagaggc
atgccgttcgcagagatcgcccagctgacggacgtccaggagggcacggtggtccgctgc
atccagcgcctggacgaggtgctgaaggaggtgcgacaggctgcccgcattgtgggagac
tccgtcctggggagcaagatggagaaagcctccttggccatccgcagggacatcgtcttc
accgcctccctctacacccactga
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