Sander vitreus (walleye): 144529590
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Entry
144529590 CDS
T11640
Symbol
smarca4a
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
svit Sander vitreus (walleye)
Pathway
svit03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
144529590 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svit03021
]
144529590 (smarca4a)
03036 Chromosome and associated proteins [BR:
svit03036
]
144529590 (smarca4a)
Transcription machinery [BR:
svit03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
144529590 (smarca4a)
Chromosome and associated proteins [BR:
svit03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
144529590 (smarca4a)
Chromatin remodeling factors
BAF complex
144529590 (smarca4a)
PBAF complex
144529590 (smarca4a)
GBAF(ncBAF) complex
144529590 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
144529590
NCBI-ProteinID:
XP_078124864
LinkDB
All DBs
Position
15:complement(27325888..27361704)
Genome browser
AA seq
1644 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYAQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPSNGPPSGPMIPGGPSGPGAGPMEGSGDPNQGMGQPNRGGPQGPGG
PGGAGGGPGGAGGPAPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQQ
QPMPNMPPSTGPGGGPVGGPGPAQANYNRPHGMVGPNMAPPGPAGVPPGMQGPPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPM
MLHQKQNRVTPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKK
KKKKKPETMEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMEAPKAGQLETWL
EMNPGYEVAPRSDSEESGSEEEEEEEEEEEEQPHSSATQAEEKKKIPDPDSEEVSEVDVL
HIIEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSTLLINGQLKQYQIKGLEWL
VSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKW
APSVVKVSYKGSPAARRAFIPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHR
MKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNA
PFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQR
VLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGY
SGGIVSGPDLYRSSGKFELLDRILPKLRATDHKVLLFCQMTSLMTIMEDYFAYRNFKYLR
LDGTTKAEDRGMLLKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ
AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRA
FLQAILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRR
EDARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTE
KQWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPATPSSSSGRGRDKDEEVKKAKK
RGRPPAEKLSPNPLSLTKKMKKIVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIR
KPVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQ
KIEKEDESEGEESEEEDDDLDEGSESESRSVKVKIKLSRKEKGERGGKGQRRRGRGARAK
PVVSDDDSEEEQEEERSASGSEED
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggcctggaccctccccaggccca
gggccatctccgggaggcatgatgggcccaagccctggtccctctccaggctcagcccac
agcatgatggggccgagcccgggccctcctgggtctggacacccccaccctccacaggga
ccctcaggatatcctcaggacaacatgcaccaaatgcacaaacccatggaagccatgcat
gagaagggaatgcccgacgacccccgctatgcccagatgaagggcatgggcatgagacca
gggggacacagtgggatgggaccccctccgagccccatggaccaacattcccaaggttac
ccctctccgttgggaggctcagagcacgcacccagccctgtcccatccaacggccctccc
tctggccccatgatccccggaggtccctccggccccggggctggccctatggagggcagc
ggggaccctaaccaggggatgggtcaacctaaccgcgggggtccccagggtccaggcgga
cccggtggtgcgggcggtggacccggcggtgcaggcggacccgctccgttcaaccagaac
cagttgcaccaactcagggctcagattatggcctacaagatgctggcccgcagccagccc
ttacccgagcacctgcagatggccgtgcaggggaagaggcccatgcccgggatgcagcag
cagccgatgcccaacatgccgccttctacggggcccggaggtgggcctgtgggtgggcca
ggaccagctcaggccaactacaacagaccacacggcatggtaggtcctaatatggcccct
cctggacctgcaggagttcccccaggtatgcaaggcccgcctaccaatggaccccctaaa
tcatggcctgaagggccgatggtgaatgctgcggccccgtcgaaccctccccagaagctg
atcccacctcagcccacgggcagaccctcgcccgctcctccctctgttccccccgccgcc
tccccagtaatgccccctcagacgcagtccccgggacagcctgcccagccgcctcccatg
atgcttcaccagaagcagaaccgcgtaacccccatccaaaagccccgcgggctggaccca
gtggagatcctccaggagagagagtacagactacaggcgcgtattgctcaccgtatccag
gagctggagaacctgccgggctctctcgccggggacctgcgcaccaaggccaccatcgag
ctcaaagccctgaggctgcttaacttccagagacagctgcgtcaggaggtggttgtctgc
atgcgacgtgacactgctttggaaacggccctcaacgccaaggcctacaagcgcagcaaa
cggcagtctctacgcgaagcccgcatcaccgagaagctggagaaacagcagaagattgaa
caggaacgtaaacgtcgtcagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggatttcaaggagtaccatcgctccatcacagcgaagctccagaaggccaccaaggcc
gtcgccacctatcacgccaacaccgagcgcgagcagaagaaggagaacgagcgcattgaa
aaggagagaatgcggaggctgatggctgaagatgaagaaggctaccgtaaactcatcgac
caaaagaaagacaagcgcctggcctacctgctgcagcagacggacgagtacgtggccaac
ctcactgagctggtgcgtgcgcacaaagccgtgcaagctctcaaagagaagaaaaagaag
aagaaaaagaagaagccagagactatggagggtggcgctcccgccctgggacctgatgga
gagcctttggatgagaccagtcaaatgagcgacctaccggtgaaggtgatccacgtggac
agtggaaagatcctgactgggatggaagcacctaaggctggccagctggagacctggctc
gaaatgaacccaggatacgaggtagcgccgcgttcagacagtgaggaaagcggttcagaa
gaagaggaggaggaggaggaagaggaagaggagcaacctcattcctctgcaactcaagca
gaggagaagaagaagattcctgaccccgacagtgaagaagtatctgaagtcgacgtcctg
cacatcatcgaacatgccaagcaggatgtagatgatgagtacggtaacgcaagtttcaac
cgaggcctgcagtcctactacgccgtggctcacgctgtcactgagaaagtggacaagcag
tccacgctgctgatcaacgggcagctcaagcaataccagatcaaaggtttggagtggctg
gtgtcgctttacaacaacaacttgaatggcatcctggctgatgagatgggtctggggaaa
accatccagaccatcgccctcatcacttacctcatggagtacaagcgcctcaacgggccc
ttcctcatcatcgtacctctctcaactctatcaaactgggtctatgagtttgataagtgg
gccccatcggtcgtgaaagtctcctacaaggggtctccagctgctcgccgtgctttcatt
cccatcttgcgcagcggcaagttcaacgtgctgctcaccacatacgagtacattatcaaa
gataagcaggtgctagcaaagcttcgttggaagtacatgattgtggacgaaggccaccgt
atgaagaaccaccactgtaaactgacccaggtcttgaacactcactacttggccccgcgc
cgcctgctgctcacaggcactccactgcagaacaagctgcccgagctctgggccctgctt
aacttcctcctgcccaccatcttcaagagctgcaccacgttcgaacagtggttcaacgcc
cccttcgccatgactggagagaaggttgacctgaatgaagaagagaccatcctgatcatc
cgacgtttacacaaagtgctcaggcctttcctgctgcgccgactcaagaaggaagtggag
gcccagctgcccgagaaggtggagtatgtgataaagtgcgacatgtcggccctacagagg
gttttgtaccgacacatgcaggccaagggagtcttgctcacagatggatcagaaaaagac
aagaagggtaaaggtggcacgaagaccctgatgaacactatcatgcaactgagaaagatt
tgcaaccacccctacatgttccagcacattgaggagtctttctctgagcatcttggctat
tctggtggaatcgtgagtggcccggacctgtaccgctcctctgggaagtttgagctgctg
gatcgcatcctgcccaagctgagggccaccgaccacaaagtgctgctcttctgtcaaatg
acctcactcatgaccatcatggaggactactttgcctaccgtaacttcaagtacctgcgt
ctggacggaaccaccaaggcagaggaccgtggcatgctgctaaagacattcaacgacccg
gcctcgcagtactttgtgttcctgctcagcaccagggctggaggcctgggcctcaacctg
cagtcggccgacaccgtcatcatctttgacagcgactggaacccacatcaggacctgcag
gcccaggaccgcgcccaccgcatcggtcagcagaacgaggtgcgcgtgctgcgcctctgc
accgtcaacagcgtggaggagaagatcctggcggcagccaagtacaaactgaacgtggac
cagaaggtcatccaggcgggcatgttcgatcagaagtcgtccggctgcgagcgtcgggcc
ttcttacaggccatcctggagcacgaggaacaggacgaggtcggggctcgaggaggctgt
cgtactaggggggcgtgggaggaagacgaagtgcccgatgacgagacggtcaatcagatg
atagccagaagtgaagaggagtttgaacagttcatgcgcatggatctggacagacgccgc
gaggacgcccgcaaccctaagaggaaaccgcgtctgatggaggaggacgacatgcccagc
tggattctgaaagacgacgccgaggtcgagaggctaacgtgcgaagaggaggaggagaag
atgtttggccgcggatcgcgccaacgcaaggaagtggactacagcgactcgctcactgag
aaacagtggctcaaggccatagaggagggaaatctagaggacatcgaggaggaagtgcgt
cacaaaaagacgaccagaaagcgcaagagagaccgcgaccacgatggcgggccggccacg
cccagctccagcagcggccgcgggcgggacaaggacgaggaggtgaagaaggcgaagaaa
cgcggccgcccgcctgccgagaagctctctcccaaccctctgtccctcactaagaagatg
aagaagatcgtcgacgctgtcatcaaatataaggacggtagtaacgggcgacagctgagc
gaggtcttcatccagctgccctctcgcaaggagctgcccgagtactacgagctcatccgc
aaaccagtggacttcagaaagatcaaggagaggatccgcagccataagtaccgcagtctg
aacgacctggagaaggacgtgatgctgctgtgtcaaaacgcccagaccttcaacctggag
gggtctctgatctatgaggactccattgtgctgcagtctgtcttcaccagcgtgaggcag
aagatcgagaaggaggatgagagtgaaggggaggaaagtgaggaagaggacgacgacctg
gacgaaggctcggagtctgaatctcgctcggtgaaggtgaagatcaagctgagccggaaa
gaaaagggggagcgaggagggaaaggacagcggaggaggggccgcggtgcccgggccaaa
ccggtggtgagcgacgacgacagcgaggaggaacaggaagaggagcgttcggccagtggc
agcgaggaggactga
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integrated database retrieval system
