Sander vitreus (walleye): 144530704
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Entry
144530704 CDS
T11640
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
svit
Sander vitreus (walleye)
Pathway
svit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144530704 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svit03041
]
144530704 (ddx42)
Enzymes [BR:
svit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144530704 (ddx42)
Spliceosome [BR:
svit03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
144530704 (ddx42)
Complex B
144530704 (ddx42)
Complex C
U2 SnRNP specific factors
144530704 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
144530704
NCBI-ProteinID:
XP_078126520
LinkDB
All DBs
Position
15:complement(10964013..10974893)
Genome browser
AA seq
921 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGRKEEPSLPQKSHTTFGGPPGSSGYGRGQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
EDQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEDENIDY
DSDGNPIASTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEEVSNLTGTQVLELRHKLNLR
VSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQMVEMLPSST
DKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKQNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLGYRE
RPGLGAESSERSSSSLSSTSSFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAASSGPP
KLTTKSNSSSCWTSAGSLSSVPTESPNSSERSQSAALCMSGFTSAGSLSSVPTSQTSSQP
SYPPPAPPPQRDIPRDRHGEDRGRHDSYHRHSDRSDRHSGEDRYGDRDRHGDGDQDRHGD
GDRDRYGDRDRDRHGDRDRYSSSSSSRHSDSRNGDASKRDRDDRRSERDGGDRGNGEGRD
RGDDSFAVPEPPKRRKSRWDN
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgagggtttgggtttggaggcttttcc
cttgcagggcgaaaagaggaacccagccttcctcagaaatctcacacaacatttggagga
cctccaggatcaagtggatatgggaggggccagcagctcccatcgttctacaaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagatgatgaggaggaatcc
agcagcaatgtggatcttccgtacatcccagctgagaactcgcccacacggcagcagatg
cagtctggtggtgggtcagacagtgaagatgacccactggatgccttcatggcagaggtt
gaggaccaagcagctaaagacatgaggaaactggaggaaaaggaaaaggagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctactttcgctac
atggcagagaatcccacagccgggctgaccctagaagaagaggatgaaaacattgactat
gacagtgatggtaacccaatcgcctctactaccaagaaaataatcttgccgcttcctccc
attgaccactccgagattgattacccaccctttgagaaaaacttctacaatgagcatgaa
gaggtcagcaacctgactggaacccaagtgttagagttaaggcacaagttgaacctaagg
gtatctggtgctgcccctccaaaaccttgcactagctttgcccacttcaactttgatgag
caactaatgcaccaaatccgcaagtctgagtacactcagcccacaccgattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtattgcaaaaactggcagtggc
aaaactgcagcttttatatggcccatgctggttcacatcatggaccaaaaggaactggag
gcaggagaagggcccatcgccatcattgtgtgtcccaccagagagctttgtcagcagatc
catgcagaatgtaagcgttttgggaaagcctactctttgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggccaaagctctgcaggagggagcagagattgtggtgtgc
actccgggtcgtctgattgaccacgttaagaagaaggccacgtcacttcagagagtgtca
tacctggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatatcaggttaga
tctgttgctagccatgtccgcccagaccgacagacccttctgtttagcgctactttccga
aagaagatagagagactggccagagacatcttggtagatcctattcgtgtggtgcaggga
gacatcggagaggccaatgaggatgtcacccagatggtggagatgctgcccagctcgaca
gataaatggggctggctgactcggcggctggtcgagttcacctcctccggctcagttctc
atcttcgttaccaagaaggcaaactgtgaggaattggctactaatctgacccaggagggc
tacagcctgggcctcctacacggagacatggaccagagtgagaggaacaaagtcatcagc
gacttcaagaagcagaatttgcctgttctggtggccactgatgtagctgctcgtggtctg
gacatcccatccattcgcacagtggtgaactacgacgtggcacgagacatcgacacgcac
acacacaggattggtcgaactggtcgcgctggagagaagggtgtcgcttacactctcctc
accaacaaagacaccacattcgctggtgacctcgtcagaaatctagagggagctaatcaa
gccgtttccaaagaactgatggatttagccatgcagaatccctggttcaggaaatcccga
ttcaagggtggtaaaggaaaaaagatgaatattggtggaggtggtcttggttacagagag
agaccaggcctgggggctgaaagttctgaacgcagcagcagcagcttgtcttccactagc
agctttgaaggttacagcaaaccagccactggggctatgggagatcgcatgtctgcgatg
aaacaagccttccaggctcagtataaaagccactttgtggctgcgtccagcggccctcca
aagctcaccactaagtctaatagctcatcgtgctggaccagtgccggcagcctgagctct
gtgccgactgaatcccccaacagttcagaaaggtcccagagcgccgccttgtgcatgtct
ggcttcaccagcgctggctccctgagctctgtgcccaccagtcaaaccagttcacagccg
agctaccctccacctgcacctcccccacagagagacatcccacgagacagacacggggag
gaccgagggcgccatgatagttaccaccgccacagcgacaggagcgatcgacacagtgga
gaggatcgctatggagaccgggatcggcatggagatggagaccaggatcggcatggagac
ggagaccgggatcgctatggcgacagggatcgggaccgccacggggaccgggaccgctac
agcagcagcagcagcagccgccacagcgatagtcgcaacggagatgcaagcaagagggac
agagatgaccggaggagtgagagggatgggggagacagggggaatggggagggcagggac
agaggagatgatagctttgctgtccctgaaccaccaaagcgtagaaagagcaggtgggac
aactga
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