Sander vitreus (walleye): 144534042
Help
Entry
144534042 CDS
T11640
Symbol
col4a5
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
svit Sander vitreus (walleye)
Brite
KEGG Orthology (KO) [BR:
svit00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
144534042 (col4a5)
04518 Integrin signaling
144534042 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
144534042 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
144534042 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
144534042 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svit04147
]
144534042 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
svit00536
]
144534042 (col4a5)
Exosome [BR:
svit04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
144534042 (col4a5)
Glycosaminoglycan binding proteins [BR:
svit00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
144534042 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
144534042
NCBI-ProteinID:
XP_078131798
LinkDB
All DBs
Position
19:973811..1059407
Genome browser
AA seq
1682 aa
AA seq
DB search
MNKDLKSLRQLAVPLLFLALSVAVQRSDSAACHGCVGSKCDCSGVKGDKGERGFPGLTGQ
PGVPGFPGPEGPIGARGEKGSDGAQGPSGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGLAGCNGTKGERGFPGSSGIPGQQGRPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGL
PGVPGDPGPAGLQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGDTGLPGPP
GPPGQVGEQKRPPETEIQRGDKGDPGLPGTPGDPGYPGPPGPAGGQKGDKGEPGEAGKRG
KPGKDGDPGTPGYPGSKGDPGLPGPPGRDGERGLKGDRGFQGPPGVVIGGQTLGQVGPKG
EPGFPGSPGVKGERGLPGLSGPPGSPGLPAIGSVGPPGPPGFPGERGQKGDSGTPGLSLP
GPPGRSGSPGTQGPPGPPGPPGFSTGGQNCIPGEPGRPGVQGEPGYPGELGQKGEKGDTC
LNCFSSTTGIPGPPGPAGQPGFPGSPGSPGNKGDRGFPGIPGAIGPPGPAGPQGSPGFPG
EKGDPGDAITVNGGRGEKGDTGFPGPPGLPGLDGRPGRDGQPGSPGAKGAPGSLLVKGER
GAPGEPGSPGIPGDRGPPGSTGYGPPGPNGEKGNQGVSGTPGGPGKPGAKGEPGLTVAEK
GLPGPRGLDGEPGLPGSQGSPGQPGQNGFPGLPGSKGDPGLPGIGLPGPPGAKGIPGSVG
QPGAPAPPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGSPGIPGAKGFTGPKGDPGFPGS
PGSPGRSGFDGSPGPKGDAGTPGLPGARGPPGTSTTGTPGQPGPPGPPGPMGPPGFPGSN
GEKGDPGPPGLDIPGLPGDRGSPGFPGSPGPVGTPGPPGGPGRDGLPGLPGLKGDMGPMG
SPGPSGESGRPGGPGGPGPKGEPGFPGRDGGPGGPGGKGERGEPGIQGPPGSSDPSQVIK
GDKGEPGLSGGPGFSGQKGVAGLPGDPGLPGSDGRPGLPGPSGPKGDPGIPGGPGGPGLP
GAKGAMGEMGFPGPSGQKGLSGQPGRPGSPGQPGGPGFPGAKGEPGSAGVGPPGLSGPKG
EPGQPGFPGSPGLKGTAGSPGLPGLPGGLGPKGDSGIPGLQGPPGIPGPKGLDGGPGGPG
LTGAPGRPGESGLPGGPGLPGDKGQAGRDGIPGPAGIKGDPGLPGYGGPGAPGLPGLPGS
KGDAGLPGPSGSPGFPGSKGETGFSGSPGPPGNPGPPGSPGQALLGPKGAQGPPGPPGRA
GAPGPEGPRGPAGSGGVKGEKGIPGAPGQPGFPGQKGDSGVPGFPGPSGVPGSSGLKGDI
GLPGVPGFPGPKGDPGLPGASGLPGNPGDVGEQGPPGDPAIAPTPIFVKGERGPPGGQGQ
PGGRGPPGPPGREGLLGQPGAPGDIGPEGPPGFSGVPGRKGDNGPAGQPGQRGYPGPPGS
DGPQGQPGPPGSVSASHGFLITRHSQAQDVPFCPDGTSLIYDGYSLLYVQGNERAHGQDL
GSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIKPFISR
CAVCEAPAMVIAVHSQTIQIPTCPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVEQSEMFRKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgctcttcctcgccctg
agcgtcgcggtgcagcgatccgactctgcggcttgccatggatgcgtgggatctaaatgt
gactgcagtggagtaaaaggagacaagggcgagcggggttttccaggtctcaccggacag
ccaggagtccccggattccccggacctgaggggccgatcggagccagaggagagaagggc
agtgatggagctcaaggaccatctggtccaaaaggaatacgagggccgtctggattgcca
ggatttccaggaacgccaggacttccaggtctgcccgggcaggacggacctccaggcccg
agaggattggcgggatgcaacggtacaaagggtgaaaggggtttcccaggaagttcagga
atccccggacagcaaggacggccgggtccacctggtctgccaggacaaaagggcgaccca
ggtgatgtgatctccaccaatcgttttggagaaaaaggagcagttggattacccggattg
cctggagttcctggagatcccggacccgccggtttgcaaggtccactcggccctcctgga
cccagaggctatgagggtcgtccaggtcccccaggacctcccggaccaaaggggaacatg
ggattgaacttccaaggacccaaaggagagaagggtgatacaggtttgccaggacctcct
ggtcctcccgggcaagttggagaacagaagaggccgcctgagacagagattcagagagga
gacaagggtgatccaggtcttccaggtaccccaggtgaccccggctatccaggacctcct
ggtcccgcgggtggccagaaaggagacaagggagaaccaggagaagcaggcaaacgaggc
aaaccaggcaaagatggcgaccccggtactccaggctaccctgggtccaaaggagaccca
ggcttgccaggtcctccaggcagggatggagaaagaggactaaaaggtgatcgaggattc
caaggcccaccaggagtggtgatcggtgggcagacactgggtcaggtcggccctaaaggc
gagccagggttccccggatccccgggagtcaaaggagaaagaggactaccaggtttgtca
ggacctccaggatctccgggacttccagctatcggtagtgttggtccgcccggaccccca
ggcttccccggagaaagaggtcagaagggggactcgggcactccaggtctgtctttgcca
ggtcccccagggcgttcggggtctcctggtacccagggtccaccggggccccccgggcct
ccaggcttttccacaggaggacaaaactgcattccaggagagcccgggcgtcccggcgtg
cagggagagccgggttatccaggagagttgggccagaaaggtgagaagggcgacacctgc
ttgaactgctttagcagcaccaccggcatcccaggaccccccggacctgccggacagccc
ggattccctggatctcctggctccccaggtaacaaaggagacagaggatttccaggaata
cctggtgccattggaccgcctggtcccgctggtcctcaaggttctccagggttccctgga
gagaagggagacccgggcgatgccatcacagtcaacggcgggcggggagagaagggggac
actggcttcccgggaccccccggtctccccggtctggacggtcggcccggtcgcgatgga
cagcctggatctccgggagccaaaggagctcctgggtctctgctggtgaaaggagaacga
ggcgcccccggtgagccaggttccccaggtattccaggagacaggggtcctccagggagc
actggctacggccctccgggacctaacggagagaaaggtaaccagggcgtttctggaaca
cctggaggtcccggtaaacccggtgctaaaggagaaccgggcctgacggtggctgagaaa
ggcttaccaggaccccgaggactggatggcgagcccggactgcctggctcacaaggtagc
ccaggtcagcccggacaaaatggtttccctggcttaccaggatcaaagggtgaccctgga
ctcccaggcatcggactcccaggaccccccggagctaaaggaatcccaggtagtgtcggc
cagccaggagctccagcaccaccgggcagaccaggagtagacggactccccggccagcct
ggatttcctggacccaagggcgagcctggctttggccttcctggccccccaggttcacca
ggaatacctggagctaaaggtttcaccggaccaaagggagatcccggtttccccggcagc
cccggctcacctggtcgatctggatttgatggctctccgggacctaaaggtgacgccggt
acacccggtctacccggagctcgtggcccccccggaacctccaccactggcacaccgggg
caaccaggcccccccggaccccctggaccaatgggacccccaggattccctggatcaaac
ggagagaagggagaccctggccctccaggtctagatattccaggtttgccaggagacaga
ggaagtcccggtttcccaggttccccaggaccagttggaactccaggaccccctggagga
cctggacgggacggcctgcctggactgccaggtcttaaaggagacatgggccccatggga
tctccaggaccttctggagaatcaggaagaccaggaggacccggcggtcccggacctaaa
ggtgaacctggattcccaggccgagacggtggacccggcggcccagggggtaaaggagag
agaggagaacccggcatccagggacccccaggaagcagcgacccctcacaggtcataaag
ggagacaaaggagaacctggactatcaggtggaccaggtttttcaggtcagaaaggcgtc
gccggtctccccggtgaccccgggctgccaggatcagacggacgtcccggactccccgga
ccatcaggtcccaaaggagatcccggcatccccggaggccccgggggtcctgggcttcca
ggagcaaaaggcgcaatgggagaaatgggatttccaggaccgtcagggcagaagggtcta
tcaggtcagccaggtcggcctggatcccctggacagccaggaggacccggtttccctgga
gccaaaggtgaaccaggctctgctggagtcggaccacccggactgtccggacccaagggt
gaaccaggtcagccaggtttcccaggaagtccaggacttaaaggaactgcaggatccccc
ggtctcccagggttaccaggagggcttggtcccaaaggcgacagcggaatcccaggacta
caaggacctccgggtatccccggtcccaagggtctcgacggagggcccggtggaccaggt
ctcaccggagctcccggtagaccaggagagtccggcttaccaggaggaccagggctgcca
ggagacaagggtcaggcaggtcgggacgggatcccaggaccagctggaatcaaaggagac
cccgggcttcctggttacggcggacccggtgctccggggcttccagggttgccaggctca
aagggagacgccggtctccccggcccctctggcagtcctggtttccccggctctaaagga
gagaccggtttttccggctcccctggtcctcccggcaaccccggccctcctgggtccccg
ggtcaggctctgctgggccccaaaggagcacaaggaccccctgggcctcctggacgagca
ggtgcacctggccccgagggtccccgcgggcccgcaggaagcggcggcgttaagggagaa
aagggaatccccggcgctcccggccagcctggcttccccggacagaagggagatagcggc
gttcccggattcccgggtccctctggtgttcccggttcttctggtttgaagggagacatc
ggtctgcccggcgttcctggattccctggaccaaagggagacccaggactccccggcgcc
agcggccttcctggaaatcctggcgacgtcggagagcaaggccctcctggcgaccccgcc
attgctccgactcccatctttgtgaagggagagcgaggaccccctggtggtcagggccag
cctggtggtcggggaccacccggccctcctgggcgtgaaggacttctgggtcagcccggc
gcccccggcgatattggtcccgagggtcctcctggcttcagcggcgtgcccggcaggaag
ggagacaacggcccggccggtcagcctggtcagcgtggctaccctggtccccctggttcc
gacggtccacagggtcaacctggtcctccaggatccgtctctgcttcccacggcttcctc
atcacccgccacagccaggctcaggatgtgcccttctgccccgacggaaccagcctcatc
tacgacggctactccctgctgtacgtgcagggcaatgagagggcccacggacaggacctc
ggctcggccggcagctgtctgcgcaggttcagcaccatgcccttcatgttctgcaacatc
aacaacgtctgcaacttcgcctcccgcaacgactactcctactggctgtccacgcccgag
cccatgcccatgtccatggcccccatcaccggagagggcatcaagcccttcatcagcagg
tgtgcagtgtgtgaagccccagccatggtgatcgcagtccacagtcagaccatccagatt
cccacttgcccttcaaattgggaagctctgtggataggctactccttcatgatgcacacc
agtgcgggtgcagagggctccggtcaggccctggcctcccccggctcctgcctggaggag
tttcgcagcgccccgttcatagagtgccacggccgagggacgtgcaactactacggcaac
tcctacagcttctggctggccaccgtagaacagtctgagatgttcaggaagccccagtcg
gagactctcaaggcgggtaacctaagaacgcgcgtcagccgttgcgtggtctgcatgaag
aggacgtaa
DBGET
integrated database retrieval system
