Subdoligranulum variabile: NQ490_01020
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Entry
NQ490_01020 CDS
T08454
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
svj
Subdoligranulum variabile
Brite
KEGG Orthology (KO) [BR:
svj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svj03009
]
NQ490_01020 (rlmD)
Enzymes [BR:
svj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NQ490_01020 (rlmD)
Ribosome biogenesis [BR:
svj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NQ490_01020 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Cons_hypoth95
MTS
Methyltransf_25
Methyltransf_31
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
UWP68466
LinkDB
All DBs
Position
216456..217817
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AA seq
453 aa
AA seq
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MAFTKNQILTLEIESLSSDGNGVAHSDGQAIFVPGTAPGDTVKVRIVKPMKTYAFGRLES
LRASGPDRIIPDCPVAGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGA
PDINRYRNKVQLPVGTDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEK
AGATSYDEESHTGLVRHLFLRQGWHSGQRLLCFILNGRALPDEQRICEELQREFDLTTVL
VNENTARTNVILGPHTHTVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTYA
ALQPEDFLLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRC
QDAGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTR
WLTEHGYRAMEVQPVDLFPRTRHVECVVKLVQA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcatttaccaaaaatcagatcctgacactggagattgagtcgctttccagcgatgga
aacggcgtggcccacagcgacggacaggccatatttgtaccgggcaccgcccccggtgac
accgtcaaggttcgcatcgtgaagccgatgaagacctacgcattcggacggctggaatcg
ctgagagcgtccggtcccgaccgtattatccctgattgccccgtagcgggcccttgcgga
gggtgcggtctgcggcatatttcttaccaagccgaatgccgggccaaaacctgttttgtg
caggacgcctttgcccggctgggcaaattggatttaccggtacacccggtgttgggtgcc
cccgacatcaatcggtaccgcaacaaggtacagctgccggtaggcaccgatgagaacgga
cacctgaccaccggcttttttgccgggcgaagccaccggatcattgcctgccccgactgt
aaactgcagccggagtggatgaaccgcctggcggcacgcgcctgtgaactgctggagaaa
gcaggcgcgacctcttatgacgaggaaagtcataccggcctggtacgccatttgttcttg
cgccaggggtggcacagcggccagcgccttttgtgttttattctcaacggccgcgccctt
cccgacgagcagcgtatatgcgaagaactgcaacgtgaatttgacctgacaacagtcctc
gtcaatgaaaacactgcccgcaccaacgtgatccttggcccccacactcacacggttttg
gggccaggcgttatcgaggataccttggccggagtttccctgcgtatgggggtgcacgaa
ttttatcaggtgaacacccctgcagccgaagttctgtatgctcaagcccgtacctatgca
gctctgcagccggaggatttcctgctggacctgtactgcggcatgggtaccatcgggctt
tccatgctgccggactgccgccgcttgctgggtgtggagattgtcccccaggcggtggaa
ggcgccaaagccaccgcggcccgccttggtctgtcgccacaaagggcagatttccgctgt
caggatgccggcgcggcggcggcccagcttgccgctgagggcgcccatcccgatgtcatc
gtcgtggatccgccccgcaaaggctgtgacccggccaccttgcaggcgattgtgcagatg
gcgccccgcacgctagtcatggtaagctgcaatgctgccaccgccgcccgggacactcgc
tggctgacagagcacggctatcgggcgatggaagtgcagcctgtggacctctttccccgc
acccgccatgtagaatgtgttgtgaaactggtacaagcataa
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