Subdoligranulum variabile: NQ490_03385
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Entry
NQ490_03385 CDS
T08454
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
svj
Subdoligranulum variabile
Brite
KEGG Orthology (KO) [BR:
svj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svj03009
]
NQ490_03385 (rlmD)
Enzymes [BR:
svj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NQ490_03385 (rlmD)
Ribosome biogenesis [BR:
svj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NQ490_03385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_15
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_4
PrmA
SAM_MT
N6_N4_Mtase
UPF0020
PCMT
Methyltransf_32
VbhA
Methyltr_RsmB-F
Methyltransf_19
MethyltransfD12
Motif
Other DBs
NCBI-ProteinID:
UWP68904
LinkDB
All DBs
Position
complement(654887..656032)
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AA seq
381 aa
AA seq
DB search
MSNTCPNFTRKCGGCPLLATPYPEQLAQKQTRLQTLLGKFAPVEPVQGMEKPWHYRNKAI
ASFAMRQGKLVCGLYAEGTHTVLPGSDCLLQQEALNRTLEAVLQAARSCRWTAYDEDRGT
GSLRHVVLRGTRKGEVLVTLVTPGPALPGSRNFCAALRKEAPWVAGIVHNINPTATSAVL
GNREKVLYGPGQVLDTLCGLRFAISSRSFYQVNPLQTEVLYRTAMKLADLSGKETVVDAY
CGIGTIGLCAASSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQAARQA
LHPDVVFLDPPRAGSTPACIGAVARMAPQRVVYVSCDPETLARDVALFSQKGYRAQRFVP
VDLFPHTRHVETIVLLQRETL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacacctgtcccaattttacccggaaatgcggcggatgcccgctgctggcgacc
ccctacccggaacagctggcccaaaaacagacccgtctgcagacgctgctgggcaaattt
gccccggtggaaccggtgcaggggatggaaaagccctggcactatcgcaacaaggccatt
gccagttttgccatgcgccagggaaaactggtctgcggtctctatgccgagggaacccat
acggtcctgccgggcagcgattgtctgctgcagcaggaagcactgaaccggacgctggag
gcggtgctgcaggcagcgcgcagctgccgttggacagcctacgatgaggaccggggcacc
ggtagtctgcgtcatgtggtactgcgcggcacccgtaaaggcgaagtgctggtaacgctg
gtcacgcccggcccggcgctgccgggcagccgcaatttctgtgcggcgctgcgcaaagag
gcgccctgggtggcgggaatcgtccacaacatcaaccccacggccaccagcgccgtgctg
ggcaaccgggagaaggtcctttacggtcccggccaggtgctggataccctgtgtgggttg
cgcttcgccatctcgtcccgcagcttttatcaggtcaatccgctccagaccgaggtgctc
taccgcacggccatgaaactggccgatctctccggaaaggaaacggtggtggatgcctac
tgtggtatcggtaccatcgggctctgtgctgcctcgtcgtcggggcaggtcctgggcatt
gagcgcaatcctgcggcggtgcgggatgccattgccaatgcccggcgcaacggggtgcgc
aatgcccgctttacctgcgccgacgccaccgagtggatggagcaggcagcccggcaagcc
ctgcatcccgatgtggtcttcctggatccgccccgggcgggcagcaccccggcctgtatc
ggagcggtcgcccggatggcaccgcagcgggtggtctatgtcagctgtgaccccgaaaca
ctggcccgggatgtggccttgttttcccaaaagggatatcgggcacagcggtttgtgccg
gtggacctgttcccccatacacggcacgtcgagacaatagtgttgctacaaagagaaacc
ttgtag
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