Subdoligranulum variabile: NQ490_04455
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Entry
NQ490_04455 CDS
T08454
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svj
Subdoligranulum variabile
Pathway
svj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ490_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svj03019
]
NQ490_04455
03009 Ribosome biogenesis [BR:
svj03009
]
NQ490_04455
Enzymes [BR:
svj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQ490_04455
Messenger RNA biogenesis [BR:
svj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQ490_04455
Ribosome biogenesis [BR:
svj03009
]
Prokaryotic type
rRNA helicases
NQ490_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
Utp25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UWP69110
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All DBs
Position
877100..878287
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AA seq
395 aa
AA seq
DB search
MQFTELTHVAPEIIRATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPI
LSKVDPASLKPQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQLKA
GCQIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRKSLS
MFSATISREVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGRDKLADAAQIIISEG
YKRVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAVLVATDV
AARGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVDQLLRLT
RNLDDCKAVKFDFNHEKLIVEEAKPQDRFQIKAYF
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttaccgagcttacccacgttgcgccggagatcatccgcgccacccaggccatg
ggctttaccgagatgaccgagattcaggagaaagccattccgctgatgatggacggccac
gacatgatcgccaaggcccccaccggcaccggcaagaccgtggccttcggcattcccatt
ctctccaaggtggacccggcctccctcaagccccaggccgtggtgctgagccccacccgg
gaactggcccagcagattgcccaggacctgcagaacctggcccagttcctgcctgccatc
aaaatcgtctgcgtctacggcggtgccgggctggacaagcagcagcgccagctgaaagcc
ggctgccagatcgtggtggccaccccgggccggctgatggaccactaccgtcaccacgcc
atcgatgtttccgacgtggagaccgtggtgctggatgaggccgacgagatgctgaacatg
ggcttctacaaggatgtacggcacatcatcgacctgatgaagcaccgcaagagtctgtcc
atgttctcggccaccatcagccgcgaagtgctggacatcggctggctctaccagcacaac
gccgccgaggtcagtgtgcagccggtggaggattccagccccaagatcgcccagtacaag
ctgctgaccaccggccgggacaagctggccgacgcggcccagatcatcatttcggaaggc
tacaagcgggtgatgatcttctgcaacaccaagtacaataccggtatgctggccaaccag
ctggcccggctgaacttcaacgtggactgcctgcacggggatctttcccaggcggagcgc
aaccgcatcatgacccggttcaaggccggtgagatcgccgtgctggtggccaccgacgtg
gcagcccggggcatcgatgtctccgacgtggacgccgtcatcaactacgacgtgcccgag
gagaacgagcactacacccaccgcatcggccgcaccggccgcgcccggaaggagggcgcc
agctacctcttctacaccaaggaggagcagaagcgggtggaccagctgctgcggctgacc
cgcaacctggacgactgcaaggctgtgaaattcgacttcaaccacgagaagctcatcgtg
gaggaggcaaagccccaggaccggttccagatcaaagcctacttttaa
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