Subdoligranulum variabile: NQ490_14465
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Entry
NQ490_14465 CDS
T08454
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
svj
Subdoligranulum variabile
Pathway
svj03030
DNA replication
svj03430
Mismatch repair
svj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ490_14465
03430 Mismatch repair
NQ490_14465
03440 Homologous recombination
NQ490_14465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svj03032
]
NQ490_14465
03400 DNA repair and recombination proteins [BR:
svj03400
]
NQ490_14465
Enzymes [BR:
svj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQ490_14465
DNA replication proteins [BR:
svj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQ490_14465
DNA repair and recombination proteins [BR:
svj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQ490_14465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
DUF6537
Motif
Other DBs
NCBI-ProteinID:
UWP68114
LinkDB
All DBs
Position
3075984..3079523
Genome browser
AA seq
1179 aa
AA seq
DB search
MSETNQRQFTHLHVHTEYSLLDGACRIDRMFEHLKAMGQTACAITDHGVMYGCVAFFDAA
KAAGIKPIIGCEVYVATRTRFDKVNRIDGNSHLILLCKNEVGYRNLIKMVSAGFLEGFYS
KPRIDKDLLEQHHEGLICLSACLAGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQ
DHGLEEDQVVLPQLIRLARETGIPMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRM
EFQTDEFYLKSADEMYELFSMVPEACENTNKIAEQCNFEFTFGETKLPYFRAPDGMENQA
YFEKLCWEGLERRYPGKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVG
PGRGSGAGSLAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVN
EKYGRDHVAQIVTFGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPMELKMTLQKALDVSP
DLKAMYEADAQVRELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPLSTNDGLPVTQF
NMVEIERLGLLKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETE
GIFQLESTGMTQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQL
AHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTE
PGKECAGCVKNGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFM
AALLTSVLDNTSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRN
LIDAVVKERQNRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGI
LKSVETDMRQNLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLS
GHPLDAYREQIAQISTCTIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTI
EDLTGTMELLVFPRVLAECRAALQENAVVVAHGRVSVKEEEAARLIVEGVQSIDTYDPNK
SFGRNRVERVQQETRGEGVAGYFLTVPARECEEMHKVENLLCNIFDGGTVKVYFRFADTG
KKAWARHMAVKDDPLLRAELVRILGQEHVKVQGTDQHAK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccaaccaaagacaatttacacatctgcatgtccacacagagtatagcctt
ttggatggcgcctgtcgtattgatcggatgtttgaacacctgaaagccatgggacaaact
gcctgtgccattacggatcatggtgtcatgtacgggtgcgtggctttttttgatgcggcc
aaggcggccggcatcaagccgatcattggctgcgaagtctatgtagcaactcggacgcgc
ttcgacaaagtgaaccgcatcgacggtaacagtcacctcatcctgctgtgcaaaaatgaa
gttggatacaggaaccttatcaagatggtttcagcaggatttttggaagggttctattcc
aagcctcgcattgacaaagatctgctggagcagcatcatgaaggactgatctgcctgtcc
gcctgcctggcaggggagatccccaaggccattttggccggtgactacgagcgcgccaaa
caaacggcattgtattatcgggatttgtttggcgcggaaaattattatattgaacttcag
gaccacggcctggaagaagaccaggtcgtgctgccgcagctgattcgactggccagggag
accggaatcccgatggtggccacgaacgatgcgcattatatcaccaaagaggattccaaa
atgcagagcattttgctttgcattcagacgggaaaaaccattgctgacgccgatcggatg
gaattccagacggatgagttctatctgaaaagcgcagatgagatgtacgagttgttctct
atggtcccggaagcctgcgagaataccaataagattgcagagcagtgcaactttgaattc
acgttcggagaaaccaaattgccgtatttccgtgcaccggatggcatggaaaatcaggcg
tattttgaaaagttgtgttgggaggggctggaacggcgctatcccggcaaggtgaccgat
gcgctgcgggagcgtcttgcctatgaaatcaaggtagtaaagaacatggggtacaccaac
tactacctcattgtgtatgatttcatcaactatgccaagagccgggatattccggtaggg
cccggccgcggttccggtgccggcagtctggcggcatactgtgtgggaatcaccgatatc
gatcctatccgttacaatctgatctttgaacgcttcctgaatccggagcgcgtgtccatg
ccggactttgacgttgacttctgctatgaacgacgccaggaagtcattgactatgtcaat
gaaaaatatggccgcgatcatgtggcacagatcgtcacctttggtacgatggctgcccgt
gcagcagtgcgcgatgtcggtcgcgtgatgggaatggcttatcaggatgtggataaggtt
gccaagctgattccgatggaactcaagatgacgctgcaaaaggcgctggatgtcagtccc
gatctaaaggccatgtatgaggcagacgcccaggtccgcgagctgatcgatacgtccttg
aaagtggaaggcatgcctcgccatgcctctacccacgcggctggcgtagtcattacacga
gagccggcaaccgaatatgtaccgctctccaccaacgatggcctgccggtcacgcagttc
aatatggtggagattgagcgtctgggccttttaaagatggactttttgggacttcgcacg
ctcacggtcattcatgatacagagacagctgtgcggcgcaaagatccggaattccgtatg
gcgacgatcagttacgatgaccctgacacctatgccatgctggcaaaaggggagacagag
ggcatttttcagttggaatctacagggatgacgcaggttcttgtgagcatgcgccccaga
aaccttgaagacattattgccctgatttccctgtaccgtccaggccccatggattccatc
cccacgtatctgcgcaatcgccgcgagcctgggaagatcagctacaaaacaccgcagctt
gctcacattctggacgttaccaatggctgcattgtttaccaggaacaggttatgcaaatc
ttccgggaattggcggggttcagctttggccaggcagataacattcgccgagccatgagc
aaaaagaaacacaaagtcatggaggcggaacgggaacattttgtgcacggctgtaccgaa
ccgggcaaagaatgcgccggctgtgtcaaaaacgggattccagaggatgtcgcaaacgaa
atctatgatgagatgatcagctttgcatcctacgcattcaacaaatcccacgcggcttgc
tacgcgtatgtggctttccagacagcttatctcaagtgccattatccgcacgagttcatg
gcggctttgctgaccagtgttctggataacacttccaaggtcatcgaatatacaacggaa
tgccagcggctgggaatcaaggtccttcagccggacatcaatgtctctcgcggcggattt
acagccgacggagattgcatccgcttcggactgaatgccgtcaagagcgtaggcaggaac
cttattgatgcggtggtaaaggaacgtcagaaccgaccttaccgtggactttatgatttc
tgccgacggatgtacggcaacgaattaaatcgccgggcactggaaaaccttatcaaaagc
ggtgctttcgatgcactggaaccgtcccggcgtgccatgctcgagtgtgtagaaggaatt
ctgaaaagcgtggagaccgacatgcgtcagaatctggaagggcagatggaccttttcgga
atgatgagcggggagagccaggaaacggcgatcaacgactacaaagtcccaaagctgtcg
gaatatcccaccagtgatttgctcaaaatggaaaaagaggtttccgggctttacctttca
ggtcatccgttggatgcctaccgggagcaaattgcacagatttccacctgtaccattgcg
cagctgcagggggaagaggccaagcagtttgataatcaaacggtgacgattctgtgcaca
gtggtcaaaaacaaaatcatgacgacaaaatccaacacgctgatggctttcaccactatt
gaagaccttaccggcacaatggaacttctagtattcccccgtgttctggcagagtgcagg
gcggcgctgcaggaaaatgctgttgtggtggcgcatggtcgggtttccgtcaaggaggag
gaagccgcccgcctgattgtggaaggggtacaatccattgatacctatgacccgaacaaa
agctttggacgcaatcgggtagagcgcgtacaacaggaaacccgtggtgagggcgttgcc
ggctattttttgactgtgccggcccgggaatgcgaagaaatgcacaaggtagaaaacctt
ctctgcaacatctttgatggtggaacagtcaaagtctattttcgttttgccgatactggt
aagaaggcatgggcccggcatatggcggtcaaagatgaccctcttttgcgggccgaactg
gttcgcattctgggacaagagcacgtaaaagtgcagggaacggaccagcatgcaaaataa
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