Streptomyces violaceusniger: Strvi_0540
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Entry
Strvi_0540 CDS
T01602
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
svl
Streptomyces violaceusniger
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_0540
Enzymes [BR:
svl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Strvi_0540
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Strvi_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
ResIII
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
AAA_25
PhoH
SRP54
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AEM80317
UniProt:
G2PBB8
LinkDB
All DBs
Position
complement(312603..316529)
Genome browser
AA seq
1308 aa
AA seq
DB search
MSTTPAPALPALLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLGEITEEITRAELR
VADRRAAVPAITYPQELPVSQKKDAILEAVRDHQVVIVAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRIAARTVAERIAEELRSPLGESVGWKVRFTDQVGQDTHVKLMTDGILLA
EIQTDRELRQYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKIVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEGGEDSDRDQITAICDAVDELQAEGPGDILVFLSG
EREIRDTADALNKKKLPVTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IRYVIDPGAARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNVKDGVQLLEELHALDGKE
KDPRKRLTQVGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQ
QADQQHARFKDESSDFLAFLNLWKYIRERQKELSSSAFRRMCRNEFLNYLRIREWQDIYS
QLRTVAKTMDIHMSEQDAAPDHVHTSLLAGLLSHVGLKDTDKNEYLGARSAKFAVFPGSA
LFKKPPRWVMSAELVETSRLWARVNAKIEPEWIEPLAQHLVKRTYSEPHWEQKQAAVMAY
ERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEEL
EHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKRREEPELLNFEKSMLINER
AQDITKDAYPDSWRQGKLKFKVTYQFEPGADADGVTVHIPLQVLNQVTADGFDWQIPGLR
EDLVTELIRSLPKPVRRHYVPAPNYAKRFLESAAPLQEPLTAALGRELQRMVGVRIEPED
WDLAKVPDHLKVTFRVVDERHRKLAEDKDVEVLRQRLRPKTRAAISKAFESSKEGVGIQQ
RGGLTRWTVGTLPRTFETRRGGQPVKAYPALVDEGASVAVRLFDTEAEQREAMWRGTRRL
ILLQLPSSPAKFVQGKLSNQAKLALSSSPHGGVQALFDDCVAAAADRLIASRGGPAWDEE
SFRKLFDAVRSDITDATLDTVRKVQEVLAAWQSCERRLKDTRSPVLLPSLTDIREQLSEL
IAPGFVTAHGVRRLPDLMRYLVAVDRRLQQLPGNADRDRARMAKVREMRDEYAWLLEQFP
PGRPVPQEALEIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacgcctgcccccgccctgcccgccctgctggagcggctgcccgagctgatg
ctgcgcgaccagcagcggctgggacgccggctcgacggtgcgcgccggatccgtaaaccc
gaggcccgagcggccgtactcggtgagatcaccgaggagatcacgcgtgccgagctgcgg
gtcgcggaccgccgcgccgccgtgccggccatcacctatccgcaagagctgccggtcagc
cagaagaaggacgcgatcctcgaggccgtccgggatcaccaggtggtgatcgtcgcaggt
gagaccggctccgggaagaccacccagattccgaagatctgtctggagctggggcgcggc
gtcaagggacttattggccatacgcagccgcgccgtatcgccgcccgcaccgtggccgag
cgcatcgccgaggagctgcggtcgccgctgggcgagtccgtcggctggaaggtccgcttc
accgatcaggtggggcaggacacccacgtcaagctgatgaccgacggcattctgctcgcc
gagatccagaccgaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccat
gagcgcagcctcaacatcgacttcctgctgggctatctggcccaactcctgccccgccgc
cccgacctcaagatcgtgatcacctccgccaccatcgacccggagcgcttttcccgccat
ttcggcgacgcaccgatcgtcgaggtcagcgggcgtacatatccggtcgaggtgcgctac
cgcccgctgctcgaggagggcggcgaggacagcgaccgcgaccagatcaccgcgatctgc
gacgcggtcgacgagctccaggccgaggggccgggcgacatcctggtcttcctctccggt
gagcgggagatccgcgacaccgccgacgcgctgaacaagaagaagctcccggtcaccgag
gtccttccgctgtacgcccggctgtcgcacgccgagcagcaccgggtcttccagagacac
accggccgccggatcgtgctggcgaccaacgtcgccgagacctcgctgaccgtccccggt
atccgctatgtgatcgacccgggcgccgcccggatctcccgctacagccatcgcaccaag
gtccagcggctgcccatcgagccgatctcccaggccagcgccaatcagcgcaagggccgc
tgcggccggaccagcgacggcatctgcatccggctgtactccgaggacgacttcctcacc
cgcccggagttcaccgacgccgagatcctccggaccaatctggcctccgtcatcctccag
atgaccgccgccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccgc
cgcaacgtcaaggacggcgtccagctcctggaggagctgcacgccctggacggcaaggag
aaggacccgcgcaagcggctcacccaggtcggccggaagctggcccagcttccggtggac
ccgcggctggcccgcatggtgctggaggcggaccgcaacggctgtgtccgcgaggtcatg
gtgatcgcggcggcgctgtccatccaggacccgcgcgagcgcccctcggacaagcagcag
caggcggatcagcagcacgcccggttcaaggacgagtccagcgacttcctggcgttcctc
aatctgtggaagtacatccgggagcggcagaaggagctgtcctcctccgccttccgccgg
atgtgccgcaatgagttcctcaactacctgcgtatacgcgaatggcaggacatctacagc
cagctgcgcacggtcgccaagaccatggacatccatatgtccgagcaggacgcggcgccc
gaccacgtgcatacgtcgttgctggcggggctgctgtcccatgtgggccttaaggacacc
gacaagaacgagtatctgggcgcgcgcagcgccaagttcgcggtgttccccggttcggcg
ctgttcaagaagccgccgcgctgggtgatgtcggcggagctggtggagacctcccggctg
tgggcgcgggtcaacgcgaagatcgagccggagtggatcgagccgctcgcccagcacctg
gtcaaacgcacctacagcgaaccgcactgggagcagaagcaggccgcggtgatggcgtat
gagcgggtcacgctctacggggtgccgatcgtcgcccagcggaaggtcaactacggccgg
atcgacccggagaccagccgcgatctgttcatccgcaacgccctggtggagggcgactgg
cgcacccaccaccagttcttccacgacaaccgcaagctgctgggcgaggtcgaggagctg
gagcaccgggcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctac
gaccagcggatccccgagcatgtggtctccggcgcccacttcgactcctggtggaagcac
aagcgtcgcgaagaaccggagcttctcaacttcgagaagtcgatgctcatcaacgagcgg
gcgcaggacatcaccaaggacgcctatccggactcctggcgccaggggaagctcaagttc
aaggtgacctatcaattcgagccgggggcggacgcggacggtgtgaccgtccacatcccg
ctgcaggtgctcaatcaggtcaccgcggacggtttcgactggcagattccggggttgcgg
gaggatctggtcaccgagctgatccgctcgctgcccaaaccggtgcgccgtcactacgtc
ccggcgccgaactatgccaagcgcttcctggaaagcgctgcccccctccaggagccgctg
accgcggcgctggggcgtgagctgcagcggatggtgggcgtacggatcgagccggaggac
tgggacctggcgaaggtccccgaccacctcaaggtcaccttccgggtggtggacgagcgg
caccgcaagctggccgaggacaaggacgtggaggtgctgcggcagcggctgcggccgaag
acgcgggccgcgatctccaaggcgttcgagtcctccaaggagggcgtggggatccagcag
cgcggcgggctgacccggtggacggtcgggacgctgccgcgcaccttcgagacgcgccgc
ggcggccagccggtcaaggcgtatccggcgctcgtcgacgagggcgcctcggtggccgta
cggctcttcgacaccgaggccgagcagcgggaggcgatgtggcgggggacgcgccggctg
atcctgctccagttgccgtccagccccgccaagttcgtccagggcaagctctccaaccag
gccaagctggcgctctccagcagcccgcacggcggtgtgcaggcgctcttcgacgactgc
gtggccgcggcggccgaccggctgatcgcgtcccgtggcggcccggcctgggacgaggag
tcgttccgcaagctcttcgacgcggtgcgcagcgacatcacggacgccacgctggacacc
gtgcgcaaggtccaggaggtgctggcggcctggcagtcgtgcgagcggcggctgaaggac
accaggagcccggtgctgctgccgtccctcacggacatcagggagcagctctcggagctc
atcgcaccgggtttcgtgaccgcccacggcgtgcggcggcttccggacctcatgcgctat
ctggtggccgtggaccggcggctgcagcagcttccgggcaacgccgaccgggaccgcgcc
cggatggcgaaggtgcgggagatgcgggacgagtacgcctggctgctggagcagttcccg
ccggggcgcccggtgccccaggaggcgctggagatccgctggatgatcgaggagttgcgg
gtcagctacttcgcgcacgccctcggtacggcctatccggtgtccgacaagcgcatcgtg
aaggccatcgacgcggccgcgccgtaa
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