Streptomyces violaceusniger: Strvi_1813
Help
Entry
Strvi_1813 CDS
T01602
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strvi_1813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_1813
03009 Ribosome biogenesis [BR:
svl03009
]
Strvi_1813
Enzymes [BR:
svl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Strvi_1813
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Strvi_1813
Ribosome biogenesis [BR:
svl03009
]
Prokaryotic type
rRNA helicases
Strvi_1813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
AEM81549
UniProt:
G2NY60
LinkDB
All DBs
Position
1710110..1711789
Genome browser
AA seq
559 aa
AA seq
DB search
MTTDAPAEQIGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGK
TAAFALPVLQRISQDGGGAEPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPI
GRQLRALERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILE
GTPADRQTVLFSATMPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQK
PAALGRVLDVESPEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVR
GGTADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPR
EHRMLKAIERTTRRQIRVEKVPTVADLRARRLELTRAALQESIVEDDLDRFRVVVETLTD
EFDVMDVALAAVKLAHEAGGAAVDEEEIPEVAPRGGRGDREGRGAPGRGPRGTRAPAEGM
TRLFIGAGRSAGIRPQDLVGAIAGESRLSGRDIGSIEIADRFSLVEVPASAVDEVIRALR
GTTLKGRKPIVRRERDRAG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagacgcgcccgccgaacagatcggcttcgccgacctgcgactgcggcctgag
ctactgcgggcactcgcggggctgggctacgaggagccgaccccgatccagcgcgaggcc
atccctccgctgctggacggccgcgatctgctgggccaggccgccacgggaaccgggaaa
accgccgcattcgccctgccggtgcttcagcgcatcagccaggacggtggtggggcggag
ccgtcggccctggtcctggtgcccacccgtgagctggccatgcaggcgtcggaggccatc
caccgctacgggcgcgacctgggcacccgggtcctgcccgtctacggcgggcagccgatc
gggcggcagttgcgcgccctggagcgcggcgtcgacgtggtggtggcgacaccgggccgg
gcgctcgaccatatcgggcgcgggacgctgcggctcgacagcctggagacactggtgctg
gacgaggccgacgaaatgctcgacatgggcttcgccgaggacatcgacgcgatactcgag
ggcacaccggcggatcgccagaccgtgctcttctccgcgacgatgccggcgcgcatcgac
gccatggcccggcgccatctgcgcggcccggtacgcatccagatcgagcgggagaaaccg
gcccccggtgagacgcccaaggtgcggcagtccgcatacgtcgtggcacgggcgcagaaa
cccgccgcgctcggtcgggtgctggacgtggagtcgccggaggccaccatcgtcttctgc
cggacgcgggaccaggtcgaccagctcaccgaaacgctcaacggacggggataccgcgcc
gaggcactgcacggcggaatgggccaggaacagcgggaccgggtcatgggtcgggtgcgc
ggcggcaccgcggacctgctggtcgctaccgatgtggccgcccgcgggctggacatcgag
cagctcacccatgtggtcaattacgacgtgccctccgcgccggagtcctatgtccaccgg
atcggccgggtcgggcgggccgggcgggagggtgtcgccatcacgctggccgagccccgg
gaacatcggatgctcaaggcgatcgagcggacgacccggcggcagatccgcgtggagaag
gtgccgaccgtcgccgatctgcgcgcccgtcggctggaactgacccgagcggcactgcag
gaatccatcgtcgaggacgatctcgaccgcttccgggtggtggtggagaccctcacggac
gagttcgacgtgatggatgtggcgctggccgcggtcaagctggcgcatgaggcagggggc
gcggcggtcgacgaggaggagattcccgaagtcgctccccgcggcgggcgcggggaccgt
gaggggcgcggcgcaccgggccgcggcccgcgggggaccagggcccccgcggagggcatg
acgcgcttgttcatcggtgccgggcgcagcgcgggcatcaggccacaggatctggtgggc
gccatcgccggggagtcccggctgagcgggcgggacatcggctcgatcgagatcgccgac
cgcttctccctggtggaagtccccgcctccgcggtcgacgaggtgatccgcgcgttgcgc
ggcaccaccctcaagggccggaagccgatcgtccggcgggagcgcgaccgggcgggctga
DBGET
integrated database retrieval system
