Streptomyces violaceusniger: Strvi_2079
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Entry
Strvi_2079 CDS
T01602
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strvi_2079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_2079
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Strvi_2079
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
AEM81811
UniProt:
G2NTG3
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All DBs
Position
2017848..2019533
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTSIRDRLDDIDGIVLTHGHEDHIGGVPFLLREKADIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVEEGHRERIGPFECEFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLPAFAKLGEEGIDLLLVDSTNAEVPGFVPPERDISGVLRQVFSNAQKRIIVAS
FASHVHRIQQILDAAHEHGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
EEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GATVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKN
RCVIAEDGVVVDLVDGIAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGEEGIISIFV
VVDSSTGKVVGGPHIHARGSGIEDSAFTAVIPKIEDAMVKSASDGVVDAHQLQQLARRAV
GKWVSDSYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagcttggccctccgccgaagctccccgagggcggcctgcgt
gtcaccccactcggcggcctcggtgagatcggccggaacatgacggtcttcgagtacggt
ggccggctgctgatcgtcgactgcggggtgctcttccccgaggaggagcagcccggagtc
gacctgatcctgccggacttcacgtccatccgggaccgcctcgacgacatcgacggcatc
gtcctgacccacgggcacgaggaccatatcggcggcgtccccttcctgctgcgcgagaag
gccgacatcccgctgatcggctccaagctgaccctcgccctgatcgaggcgaagctgcag
gagcaccggatccgcccgtacaccctcgaggtcgaggaggggcaccgcgagcggatcggc
cccttcgagtgcgagttcatcgcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcaccccggccggcatggccgtgcacaccggcgacttcaagatggaccagttgccg
ctggacggccgcctcacggatctgcccgcgttcgccaagctcggcgaggagggcatcgat
ctgctcctggtggactccaccaacgcagaggtccccgggttcgtaccgcccgagcgcgat
atctccggcgtactgcgccaggtcttcagcaacgcgcagaagcgcatcatcgtcgccagc
ttcgccagccatgtgcaccgcatccagcaaatcctcgacgcggcccatgagcacggacgc
agggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcacgtgacctcggc
tatctgcgggtgccggccggtctcgtggtggatgtgaagaccctcgacgacctaccggac
gaggaggtggtgctcgtctgcacgggctcccagggcgagccgatggccgcgctgtcccgg
atggccaaccgcgatcaccagatccggatcgtccagggcgacacggtgatcctggcctcg
tcgctgatccccggcaatgagaacgcggtgtaccgggtcatcaacggactgacgcgatgg
ggcgccacggtcgtccacaagggcaatgccaaggtccatgtctccggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagcccaagaacctgatgccggtgcacggc
gaatggcgccatctacgggccaacgccgaactgggcgcgttgaccggggttccgaagaac
cgttgcgtcatcgccgaggacggggtcgtggtcgacctcgtcgacggcatcgccaagatc
gtcggcaaggtgcaggcgggatacgtgtacgtggacggcctctcggtcggcgatgtcacg
gagacctcgctcaaggaccgccgcatcctcggcgaggagggcatcatctcgatcttcgtg
gtcgtcgacagttcgaccggcaaggtcgtgggtggtccgcatatccacgcaaggggctcc
gggatcgaggactcggccttcaccgcggtcatcccgaagatcgaggatgccatggtgaag
tcggcctccgacggggtcgtggacgcgcatcagctccagcagttggcgcggcgcgcggtc
ggtaagtgggtctccgacagctaccgacggcgcccgatgatccttccggtggtcgtcgag
gtctga
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