Streptomyces violaceusniger: Strvi_2141
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Entry
Strvi_2141 CDS
T01602
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strvi_2141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_2141
03400 DNA repair and recombination proteins [BR:
svl03400
]
Strvi_2141
Enzymes [BR:
svl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Strvi_2141
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Strvi_2141
DNA repair and recombination proteins [BR:
svl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Strvi_2141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
AEM81873
UniProt:
G2NYF8
LinkDB
All DBs
Position
complement(2101599..2103764)
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AA seq
721 aa
AA seq
DB search
MSDEDLRTSADRVLARLVGDTTGSARLREDQWRAIEALVAERRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIVSPLLALMRNQVEAAARAGIQARTINSANTEEWDTIQAEVAEGG
VDVLLVSPERLNNPDFRDQVLPQLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADL
PQGVPVLATTATANARVTADVAEQLGTGEGTGRALVLRGPLDRESLRLGVLPLPDAAHRL
AWLAEHLDELPGSGIIYTLTVAAAEEVTAFLRQRGHTVASYTGKTENADRQQAEEDLLAN
RVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDE
AIWRYFASLAFPPEEQVRRTLEVLAASDRPVSLPALEPRVELRRSRLEIMLKVLDVDGAV
RRVRGGWTATGQPWAYDAERYAWVARQREAEQQAMREYASTGDCRMEFLRRQLDDDKAAP
CGRCDNCAGARFTTEVSDASLDAARGELGRPGVEVEPRRMWPTGLPTVGVDLKGRIPADE
QAAPGRALGRLSDIGWGNRLRPLLGPQSPDAPVPDDVAGAVVTVLADWAKGPGGWASGAP
DAADRPVGVVTVASRTRPQLIRTLGERIATVGRLPLLGSVAYHDGEFDTRVPRTNSAQRL
RALHGALTVPPPLAAALAEAGGPVLLVDDMADTGWTLAVASRLLRRAGAAGVFPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagatctgcgtacctcggccgaccgcgtcctggcccgcctcgtaggggat
accaccggctccgcccggctccgggaggatcaatggcgggcgatcgaggcgctggtcgcc
gagcgccgccgtgcgctcgtcgtgcagcgcaccggctggggcaagtcggcggtgtatttc
gtcgccaccgcgctgctgcgcgagcgcggcagcggtccgaccgtgatcgtctccccgctg
ctcgcgctgatgcgcaaccaggtcgaggccgccgcgcgcgccggtatccaggcccgcacc
atcaattccgccaacaccgaggagtgggacaccatccaggcggaggtggccgagggcggg
gtggatgtgctgctggtgagccctgagcggctcaacaaccccgatttccgcgaccaggtg
ctgccacagctggccgccgccaccggcctgctggtcgtcgacgaggcgcactgcatctcc
gactggggccatgacttccggcccgactaccgcaggctgcgcaccatgctcgccgatctg
ccccagggcgtgcccgtgctcgccacgaccgcgaccgcgaacgcacgggtcacggccgat
gtggccgagcagttgggcaccggtgaagggaccgggcgggcgctggtgctgcgcgggccg
ctggaccgggagagcctgcggctgggcgtgctgccgctgccggacgccgcgcatcggctc
gcctggctcgccgagcacctcgatgagctgccgggctccgggatcatctacaccctcacc
gtcgccgcggccgaggaagtgaccgcgttcctgcgccagcgcggccacaccgtcgcctcc
tacaccggcaagacggagaacgcggatcgccagcaggccgaggaggacctgctggccaac
cgggtcaaggcgctggtcgccacctccgcgctgggcatgggcttcgacaagccggacctc
ggcttcgtggtgcatctcggttcgccgtcctcccccatcgcctactaccagcaggtcggg
cgcgccgggcgcggtgtggagcacgccgaggtgctgctcctgcccggccgcgaggacgag
gcgatctggcggtatttcgcttcgctcgccttcccgcccgaggagcaggtgcgccgcacc
ctcgaggtgctggcggcgtcggaccggccggtgtccctgcccgcgctcgagccccgggtc
gagctgcggcggtcgcgtctggagatcatgctcaaggtgctcgatgtggacggcgcggtg
cggcgtgtgcgtggcggctggaccgcgaccgggcagccctgggcgtatgacgcggagcgg
tatgcgtgggtggcgcgccagcgggaggccgagcagcaggccatgcgggagtacgcctcg
acgggcgactgccggatggagttcctgcggcggcagttggacgatgataaggcggcgccc
tgtggccgctgtgacaactgcgcgggggcccggttcaccaccgaggtgtccgacgcctcg
ctggacgcggcgcgcggcgagctggggcggcccggtgtcgaggtggagccgcgccggatg
tggccgaccgggctgcccacggtgggcgtcgatctcaagggccgcattccggcggatgag
caggccgccccgggccgggccctgggccgtctctccgatatcggctggggaaaccggctc
cggccactgctgggcccgcagagcccggacgccccggtgcccgacgatgtggccggtgcg
gtggtgacggtgctcgccgactgggccaagggccccggcggctgggcctcgggcgcgccg
gacgccgcggaccgcccggtgggcgtggtcaccgtcgcctcgcgcacccgcccacagctg
atccggacactcggcgaacggatcgccaccgtcggccggttgccgctgctcgggagcgtc
gcgtaccacgacggcgaattcgacacccgggtgccgcgcaccaacagcgcccagcggctg
cgagcgctgcacggcgcgctgaccgtgcctcccccgctggccgcggcccttgccgaggcg
ggtgggccggtgctgctggtggacgacatggcggacaccggctggaccttggccgtcgcc
tcccggctgctccgccgggccggagcggccggagtgtttccgctggtcctggccgtgcag
gggtag
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