Streptomyces violaceusniger: Strvi_2297
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Entry
Strvi_2297 CDS
T01602
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
svl
Streptomyces violaceusniger
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svl03016
]
Strvi_2297
Enzymes [BR:
svl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Strvi_2297
Transfer RNA biogenesis [BR:
svl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Strvi_2297
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEM82022
UniProt:
G2PCJ4
LinkDB
All DBs
Position
complement(2285996..2287273)
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AA seq
425 aa
AA seq
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MTDAQETAAETTLRTTGGAPPDDLPPAPVPLLEPREGIPPVTADADALAEVIATFAAGHG
PVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVGCPDLSGLGAAIADAEWVLHAATQ
DLPCLRDIGMIPARIFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVDWSTRPLPE
PWLHYAALDVELLVDLRDALEEELERQSKLEWAHQEFAAIAAAPPAPPRKDPWRRTSGMH
KVRRRRQMAVVRELWTARDRIAQRRDVSPGKVLGDAAIVEAALALPANARALAALNGFGH
RMNRRQLEQWQAAVDRARELPEADLPQPGQPVTGPPPPRAWADKDPAAAARLSAARAAVT
QLAEGLNLPQENLIAPDTVRRLCWEPPAEPTTDAVASVLAGHGARPWQIDQVTPVLAAAL
LATPA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagagacgacactgcgaaccaccgggggcgctcct
ccggacgacctccccccggcgccggtccccttgctggagccgcgcgagggcatcccgccc
gtcaccgcggacgcggacgcgctcgccgaggtcatcgcgaccttcgccgcgggccacggc
ccggtggccgtcgacgccgagcgcgcctccggctaccgctacggacagcgggcctatctg
gtccagctgcgccgggccggagcggggaccgcactgatcgaccccgtcggctgccccgac
ctctccggtctgggcgccgcgatcgccgacgccgaatgggtcctgcacgcggcgacccag
gatctgccctgtctgcgggacataggcatgatccccgcccggatcttcgacaccgaactc
gcgggccggctggccggattcgcccgggtggggctcggcgccatggtcgagaacatcctc
ggatacgccctggagaagggccactccgccgtcgactggtcgacccgcccgctgcccgag
ccctggctgcactacgccgcgctcgatgtcgagctgctggtcgacctgcgcgacgcgctg
gaggaggagctggagcggcagagcaagctggagtgggcgcatcaggagttcgcggccatc
gccgcggccccgcccgccccgccgcgcaaggacccctggcggcggacgtcggggatgcac
aaggtccggcggcgccggcagatggccgtggtgcgcgagctgtggacggcccgggaccgg
atcgcccagcgccgcgatgtctcgccgggcaaggtgctgggcgacgcggccatcgtcgag
gccgcgctggccctgcccgcgaacgcccgggcactggccgcgctgaacggtttcggccac
cggatgaaccggcgccagctggagcagtggcaggccgcggtggaccgggcgcgggagctg
cccgaggccgacctcccccagccgggccagccggtgaccggtccgcccccgccgcgggcg
tgggccgacaaggacccggccgcggcggcgcggctctccgcggcgcgcgcggccgtcacc
caactggccgaagggctgaatcttccgcaggagaacctgatcgccccggacaccgtccgg
cggctgtgctgggagccgcccgccgagccgacgacggatgcggtcgcctccgttctcgca
ggtcacggcgcccgtccctggcagatcgaccaggtgaccccagtgctcgcggccgccttg
ctggcgaccccggcatga
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