Streptomyces violaceusniger: Strvi_3840
Help
Entry
Strvi_3840 CDS
T01602
Name
(GenBank) Formamidopyrimidine-DNA glycosylase catalytic domain protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Strvi_3840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svl03400
]
Strvi_3840
Enzymes [BR:
svl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Strvi_3840
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Strvi_3840
DNA repair and recombination proteins [BR:
svl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Strvi_3840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Zn_ribbon_8
Auto_anti-p27
Zn_ribbon_IS1595
DZR
Zn_ribbon_TFIIB
PknG_rubred
Zn_ribbon_3
DZR_2
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-ProteinID:
AEM83502
UniProt:
G2PEM1
LinkDB
All DBs
Position
4081620..4082408
Genome browser
AA seq
262 aa
AA seq
DB search
MPELPDVEGFRRTLASCAQGHRVERVEVADAGVLHGVTAQRLKRDLEGRRFAAPRRHGKW
LIAPTDGPTVVVHFGMTGRLACGAESEPAGRFERVAFDLDDGHRLGYEDQRKLQGIWLAA
TEADVDRILGDQGPDALSLSRADLDRLLAGRRGRVKATLTDQAVIAGLGNLLGDEILWRA
RIHPQRPANALTDDEHERLHTAMREVLRASVRAGRVPDDPDWLTGQRDDPDPHCPRCGHP
LRRGRIAGRTSLWCPHCQRDGG
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctaccggatgtcgaggggttccggcgaacgctggcctcctgcgcccagggc
caccgcgtcgagcgggtggaggtggccgacgcgggggtgctgcacggggtgaccgcgcag
cggctgaagcgcgatctcgagggccgccgcttcgccgcaccgcgccgccacggcaagtgg
ctgatcgcccccaccgacgggcccacggtcgtggtgcacttcggcatgaccgggcggctg
gcctgcggggcggagtccgaaccggccggccggttcgagcgcgtcgccttcgacctcgac
gacggccaccgcctcggctacgaggaccagcgcaaactccagggcatctggctcgccgcc
accgaagccgacgtcgaccggatcctcggcgatcagggcccggacgcgctctccctgagc
cgggccgatctcgaccggctgctggcggggcggcgcggacgcgtcaaggccacactgacc
gaccaggccgtgatcgccggactcggcaacctgctcggcgacgagatcctgtggcgggcc
cggatccatccgcagcggccggcgaacgcgctgaccgacgacgagcacgaacggctccac
accgcgatgcgcgaggtgctgcgcgcctcggtgcgggcggggcgggtgccggacgacccg
gactggctcaccggacagcgcgacgacccggacccgcactgcccccgctgcggccatccg
ctgcgccgcggccggatcgcggggcggaccagcctgtggtgcccccactgccagcgggac
ggcggctga
DBGET
integrated database retrieval system
