Streptomyces violaceusniger: Strvi_5019
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Entry
Strvi_5019 CDS
T01602
Name
(GenBank) DNA repair protein and transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Strvi_5019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svl03000
]
Strvi_5019
03400 DNA repair and recombination proteins [BR:
svl03400
]
Strvi_5019
Enzymes [BR:
svl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Strvi_5019
Transcription factors [BR:
svl03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Strvi_5019
DNA repair and recombination proteins [BR:
svl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Strvi_5019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
DUF7437
Motif
Other DBs
NCBI-ProteinID:
AEM84559
UniProt:
G2PFJ8
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All DBs
Position
5568802..5570295
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AA seq
497 aa
AA seq
DB search
MSDDSRYEAVCSRDARFDGEFFFGVATTGIYCRPSCPATTPRRKNVRFFPTSAAAQGSGF
RACRRCRPDAVPGSADWNARADAVGRAMRMIGDGVVDREGVAGLAARLGYSARQVQRQLT
AELGAGPVALARAQRAHTARILLQTTALRASEIAFAAGFSSVRQFNDTLREIYAATPTEL
RAARPAKSSLSGPAVATGGVLGTNGGTAGVPLRLAYRGPYDTTQVFDYLARRALTGLEEM
VGSPGARTYRRTLRLPHACAIVEIDERPGDGWLECRLRLTELRDLTTAIQRIRRLFDLDA
DPYAVAERLGANTALAPLVGARPGLRSPGTADPHELAVRAVLGQQVSVAAGRVLGDALVA
AYGKPLARPDGGLTHLFPRVEDLAEAALAELGMPESRRATLRTLATALADGSVRLDAGAD
RDRAEKELLGLRGIGPWTAGYVRMRALSDPDVLLESDVAVLAGARGAGAHLEDSEGWRPW
RSYAMHHLWNVPRARPE
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacagcaggtacgaggcggtgtgcagccgcgacgcgcgattcgacggcgag
ttcttcttcggtgtcgccacgaccgggatctactgccggccgagctgccccgcgaccacg
ccccggcgcaagaacgtccggttcttcccgacctcggccgccgcgcagggctcggggttc
cgggcctgccgtcgctgtcggccggacgccgtgcccggttccgccgactggaacgcgcgg
gcggacgccgtcggccgcgccatgcggatgatcggggacggagtggtggaccgggaggga
gtggccgggctcgcggcgcggctcggctacagcgcccggcaggtgcagcggcagttgacc
gccgagctcggcgccgggccggtcgcgctcgcccgcgctcagcgcgcccacaccgcgcgg
atcctgctgcagaccaccgccctgcgggcctcggagatcgcgttcgcggccgggttctcc
agcgtccggcagttcaatgacacgctgcgcgagatatacgccgccacccccaccgaactg
cgtgccgcccggcccgcgaagtcctccctgtccgggcccgcggtggccaccggcggggtg
ctggggacgaacggcgggacggccggggtgccgctgcggctcgcctaccgcgggccgtac
gacaccacgcaggtcttcgactatctcgcccggcgcgccctcaccggcctggaggagatg
gtggggagcccaggcgcccggacctaccgccgcaccctgcggctgccgcacgcctgcgcc
atcgtcgagatcgacgaacggcccggcgacggctggctggagtgccggctgcgcctgacc
gagctgcgcgatctgaccaccgccatccagcggattcggcgcctgttcgacctggacgcc
gatccgtacgcggtcgccgagcgcctcggcgccaataccgcgctcgcgcccctggtgggc
gcgcggccggggctgcgttccccgggcaccgccgacccccatgaactcgccgtgcgcgcc
gtgctcggccagcaggtctcggtggccgccgggcgcgtgctgggcgatgcgctggtcgcc
gcgtacgggaagcccctggcgcggcccgacggcgggctcacgcatctcttcccgcgcgtg
gaggacctggccgaggcagcgctcgcggagctcggcatgccggagagccgacgcgccacg
ctgcgcacgctcgccaccgcgctcgcggacggctcggtgcggctggatgccggcgccgac
cgcgaccgggccgagaaggagctcctggggctgcgcggtatcggcccctggacggccggt
tacgtccggatgcgggcgctgagcgaccccgatgtgctgctggagtcggatgtcgccgta
ctggccggagcccgcggcgccggggcccacctggaggactccgagggctggcggccctgg
cgctcgtacgccatgcaccacctctggaacgtcccgcgggcccggcccgagtga
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