Streptomyces violaceusniger: Strvi_5028
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Entry
Strvi_5028 CDS
T01602
Name
(GenBank) RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
svl
Streptomyces violaceusniger
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svl03021
]
Strvi_5028
Transcription machinery [BR:
svl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Strvi_5028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
DUF4423
HTH_Crp_2
HTH_24
KORA
DUF7343
HTH_1
GerE
Motif
Other DBs
NCBI-ProteinID:
AEM84568
UniProt:
G2PFK7
LinkDB
All DBs
Position
complement(5579583..5580389)
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AA seq
268 aa
AA seq
DB search
MTAVQAHPRAHPKHAHDDAPDTSGAFRRIAELPDGSEKEALREEVVRAWMPMAERIASQY
RNRGETHEDLRQVAMVGLVKAVKRYEPDRGSAFESYAVPTVVGEVKRHFRDHMWGLHVPR
RVQELRNRVRTAVQELTRSPDDRSPSVRDIARHTGMAEEDVLLGMEALESFRTLSLDAAL
RGADDGYALVDTLGSTESSYERVVQRESLKPCLRRLPEREREILYLRFFCDETQSRIADR
LGISQMHVSRLISRTCARLGEEVGARAA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgacggccgtacaagcacatccccgagcacaccccaagcatgcgcacgacgacgcgccc
gacacctccggcgcgttccgcaggatcgccgaactgccggacggctcggagaaggaggcc
ctgcgggaggaagtcgtccgggcctggatgccgatggccgagcgcatcgcctcgcagtac
cgcaaccgcggtgaaacgcacgaggatctgcggcaggtggccatggtcggtctggtcaag
gcggtcaagcgctatgaaccggaccggggttcggccttcgagagctacgccgtcccgacc
gtcgtcggcgaggtcaagcggcacttccgcgaccatatgtggggcctgcacgtgccgcgc
cgggtccaggaactgcgcaaccgggtccgcaccgccgtccaggagctgacccgttcgccg
gacgaccgttcgcccagcgtcagggacatcgcacggcacaccggcatggccgaggaggac
gtcctcctcggcatggaagcgctcgagagctttcgtacgctgtcgctggacgccgcactg
cgcggcgcggacgacggctacgcgctggtggacaccctcgggtccaccgagtcctcctac
gagcgggtcgtccagcgcgaatccctcaagccctgtctgcgcaggctccccgagcgtgaa
cgggagatcctctacctgcggttcttctgcgacgagacccagagccggatcgccgaccgg
ctcggcatctcccagatgcatgtctcccggctcatcagccgcacctgcgcccgcctgggc
gaggaggtcggtgcgcgtgccgcgtag
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integrated database retrieval system
