Streptomyces violaceusniger: Strvi_5407
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Entry
Strvi_5407 CDS
T01602
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl00040
Pentose and glucuronate interconversions
svl01100
Metabolic pathways
svl02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Strvi_5407
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Strvi_5407
Enzymes [BR:
svl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Strvi_5407
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AEM84932
UniProt:
G2NUW6
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Position
complement(6097249..6098316)
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AA seq
355 aa
AA seq
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MEAERRAVGRGRRRGLAAVVGALTLAGAVALPGEGAFAEGARGPAAAPWSADVADGFASV
SALGQNGTYGGRDGRTVTVRTLADLEKYATAAEPYVIVVAAAITMDPKGKEIKVASDKTI
VGSGTSGQIVGGGFFLGQGVHNVIIRNLTIRDSYEGTWNDKEHDWDAIQMDGAHHVWIDH
NELRHMADGLIDSRKDTTYLTVSWNRLQQNNKSFGIGWTENTTADITIHHNWFRESEQRN
PSADNIAHAHLYNNYLQDDPGTDINSSYGNYARGNTKMVLENSYFQGFKNPVIKDTTATL
VQRGNVFVNTTGRNESGGTAFDPKAYYSYSLDPADRVPAIVTSGSGPTQAVGTTG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgaacgtcgggcggtggggcgcggcaggcgccgtgggctggcagcggtcgtc
ggggccctgacgctggcgggagcggtcgctctgccgggggagggagcattcgccgaaggc
gcgcgcggaccggccgccgcgccctggagcgccgatgtcgccgacgggttcgcatccgtc
agcgcgctggggcagaacgggacgtacgggggccgggacggccgtaccgtcaccgtgcgg
accctcgccgatctcgagaagtacgcgacggcagccgagccgtacgtgatcgtcgtggcc
gcggcgatcacgatggatcccaagggcaaggagatcaaggtcgcctccgacaagaccatc
gtgggctcgggcacctcgggtcagatcgtcggtggcggcttcttcctgggccagggcgtg
cacaacgtcatcatcaggaacctgacgatccgtgactcctacgagggcacctggaacgac
aaggagcacgactgggacgccatccagatggacggcgcccaccatgtgtggatcgatcac
aacgaactgcggcatatggccgacgggctgatcgacagccgtaaggacaccacctacctc
acggtgtcctggaaccggctgcagcagaacaacaagagcttcgggatcggctggacggag
aacaccacggccgacatcacgatccaccacaactggttccgcgagagcgagcagcgcaac
ccgtccgccgacaacatcgcccatgcgcatctctacaacaactacctgcaggacgacccc
gggacggacatcaactcctcctacggcaactacgcccgggggaacaccaagatggtgctg
gagaacagctacttccagggcttcaagaaccccgtcatcaaggacaccaccgccaccctg
gtccagcgcggcaacgtcttcgtcaacaccaccggccgcaacgagagcggcggcaccgcg
ttcgacccgaaggcgtattactcctactccctcgaccccgccgaccgggtgccggccatc
gtgacctccggctcgggccccacccaggccgtcggcaccaccggctga
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