Streptomyces violaceusniger: Strvi_7892
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Entry
Strvi_7892 CDS
T01602
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strvi_7892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_7892
03009 Ribosome biogenesis [BR:
svl03009
]
Strvi_7892
Enzymes [BR:
svl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Strvi_7892
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Strvi_7892
Ribosome biogenesis [BR:
svl03009
]
Prokaryotic type
rRNA processing factors
Strvi_7892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AEM87219
UniProt:
G2P7I2
LinkDB
All DBs
Position
complement(8952314..8956402)
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AA seq
1362 aa
AA seq
DB search
MLEPIEPTQPVQPLEPSAPRAAAPGDPIESTPSDTLPPRRRRAASRPAGPPVGGVSGAEV
TTPTSPAIPADQIVAIAASEAASEPVAAGAAMVTASGSASGSDTESAAPPARTRRRVARK
ATAPAGSPEAAETVLTADAGRGGEEPQAAVEPVAEAAPEAAPPARARRRATRKATAPAGA
PAEAEAVAPDQGMEPEQAEEPAAAPEAEAETAPAAPARTRRRASRKATAPAGSPQAEAAD
ADASSAAAAGGSGDEATAPAAVAADAPADEAPRTRARRRATRKTTAPAGAPAEAEAVAPT
EPDEAAEAEAEAETVPPAPARTRRRASRKATAPAGTPAEAEAAEEPAAEQRGESAEEPAG
AQAEEAPRGRTRRRATRGTAAEEPSSAPEPQTAEAEAPAAEAEPEPAPRSRRRAVRPPTA
VFQAPVFTEPVFQTPESAAAEAAAALEETEEEEEEQPTAEETTQAVEPEAPTGRRRRRRR
GGEPAEEQPEAEETEAVEAESGQPEGEHGDEEQGDRPARRRRRGGRRRRRGETAEGEGAE
GRSEAETGERYDDDSAAEGEGAEEQGEGRDEVDAEAGEHGGGSASSRRRRRRRRRSGDAV
EAEAGGDDPERTVVKVREPREPRERRGKESESSADEVQSIKGSTRLEAKKQRRREGREQG
RRRVPIITEAEFLARREAVERVMVVRQNGDRTQIGVLEDDVLVEHFVNKEQATSYVGNVY
LGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFGALGLSNGPRRIETALKSGQSVLVQVT
KDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVI
VRTAAEGASEDELSRDVARLQAQWEEIKKKSKSGNAPSLLYGEPDMTVRVVRDIFNEDFS
KVIVSGDDAWETIHGYVSHVAPDLADRLQRWTSDVDVFATYRIDEQLMKALDRKVWLPSG
GSLVIDRTEAMIVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDF
IDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHC
NGRGVIVHMDQASAAGGGGGKRKKKKSAGGAQQPAEPEQAAVAEPEDVTEAAAEIAAEAT
QPRPEPEPVFAADEELYSSAAEAEAAATRGRTRRRATRKASAPAGAPKAAKESEGSVVVV
ADEPREASKAEPEAVAEAPASAPVEEPESAAPLEAVPAPRTRRRVTRKVTAPAGSPTGSE
EAAVVVVSASSAESEPEPKAEAAPEGEAESEAPAKKTARKAAKKAPAKKTAAKKTAEKKT
AAKKTAAKKTTAKKTTAKKTATKKTAAAEQQTPQSVSAAADD
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccaattgagccgacccaacctgtccagccccttgagccgtccgcgccgcgt
gccgcggcgcccggggatcccatcgagagcacgcccagcgacaccctgccgccgcgccgc
cgccgtgcggcctcccgcccggccggtccgccggtcggcggggtgagcggcgccgaggtc
accacgcccacttcgccggccataccggctgatcagatcgttgccatcgccgcgtccgag
gccgcttccgagcccgtcgccgccggtgccgccatggtcaccgcgagcggatccgcatcc
gggtccgacaccgaatccgccgctccacccgcccgtacgcggcgtcgggtggcgcgcaag
gcgacggctccggcgggttcgccggaggccgcggagaccgtgctgacggccgatgccggc
cgtggtggcgaggagccccaggccgccgtcgagcccgtggcggaagccgcccccgaggcc
gctccgcccgcccgtgcgcgtcgccgtgcgacccgtaaggcgaccgctccggcgggtgcg
cccgcggaggcggaggccgtggcgccggaccagggcatggagcctgagcaggccgaggag
cccgctgcggctccggaggccgaggcggagaccgcgcccgcggcccctgcccgtacgcgc
cgtcgtgcgagccgtaaggccacggcccccgcgggctcgccgcaggcggaggccgccgac
gcggacgcgtcgtctgcggcggccgctggtggcagtggtgacgaggccacggccccagcc
gcagtcgcagccgatgccccggccgatgaggccccgcgtacccgtgcgcgtcgtcgtgcg
acccgtaagaccaccgctccggcgggtgcgcccgcggaggcggaggccgtggcgccgacg
gagccggacgaggccgcggaggccgaggccgaggcggagaccgtgcccccggcgcccgcc
cgtacccgtcgccgtgcgagccgtaaggccaccgcccccgccggaacgcccgcggaggcc
gaggccgccgaggagcccgccgccgagcagcggggcgagagcgccgaggagcccgccggt
gcgcaggccgaggaggcgccgcgtggccgcacccgccgccgcgccacccgaggcaccgcc
gccgaggagccgagcagcgctccggagccgcagaccgccgaggccgaggccccggccgcc
gaggccgagccggagcccgcgccccgttcgcggcgccgggcggtccgcccgccgacggcc
gtgttccaggcacccgtcttcaccgagccggtcttccagacgccggagagcgccgccgcc
gaggccgccgccgcgctggaggagaccgaggaggaggaagaggagcagccgacggccgag
gagaccacccaggccgtcgagcccgaggcgcccaccggccgccgtcggcgccgccgccgt
ggcggtgagcccgccgaggagcagccggaggccgaggagaccgaggccgtcgaggccgag
tccggtcagcccgagggcgagcacggcgatgaggagcagggcgaccgtccggcccgtcgc
cgccgccggggcggacggcgtcgccgccggggcgagaccgccgagggcgagggcgccgag
gggcgttccgaggccgagaccggtgagcggtacgacgacgattcggccgccgagggcgag
ggcgccgaggagcagggcgagggccgggacgaggtggacgccgaggccggtgagcacggt
ggcggcagcgccagcagccgtcgtcgccggcggcgccgccggcgcagcggcgacgcggtc
gaggcggaggcgggcggtgacgacccggagcgtacggtcgtcaaggtccgcgagccccgg
gagccccgtgagcggcgcggcaaggaatccgagtccagcgccgacgaggtgcagtcgatc
aagggatcgacgcgtctcgaggccaagaagcagcgccgtcgcgagggccgtgagcagggc
cgccgccgcgttccgatcatcaccgaggccgagttcctggcccgccgcgaggcggtcgag
cgggtcatggtcgtccggcagaacggcgaccgtacccagatcggcgtgctggaggacgac
gtcctcgtcgagcacttcgtgaacaaggagcaggcgaccagctacgtcggcaacgtctac
ctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttcgtcgacatcggcaag
ggccgcaacgccgtgctgtacgcgggcgaggtgaacttcggggcgctggggctctccaac
gggccgcgccgcatcgagaccgccctgaagtccggccagtccgtcctggtgcaggtcacc
aaggacccgatcggccataagggcgcccggttgaccagccaggtctccctcccgggccgc
tatctggtctatgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgacacc
gagcgggcgcggctgaagcagatcctcaagaagatcgtccccgaggacgcgggcgtgatc
gtccgcaccgccgccgagggggcgagcgaggacgagctgtcccgcgacgtcgcccggctg
caggcgcagtgggaagagatcaagaagaagtcgaagagcggtaacgccccgtcgctgctc
tacggcgagcccgacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctcc
aaggtcatcgtcagcggtgacgacgcctgggagaccatccacggctatgtctcgcatgtg
gcgcccgacctcgcggaccggctccagaggtggacctcggacgtcgacgtcttcgccacc
taccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctgcccagcggt
ggctcgctggtgatcgaccggaccgaggcgatgatcgtcatcgacgtcaacaccggcaag
ttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcggcc
gaggagatcgtgcgccagcttcggctgcgtgacctcggcggcatcatcgtgatcgacttc
atcgacatggtgctggagtccaaccgggatctggtgctgcgcaggctgctggagtgcctg
ggccgggaccgtacgaagcaccaggtggcggaggtcacctcgctcggcctggtccagatg
acccgtaagcgggtcggccaggggctgctggagtccttctccgagtcctgtgtgcactgc
aacggccgcggcgtgatcgtccacatggaccaggcgtcggccgccggcggcggtggcggc
aagcgcaagaagaagaagtcggccggtggcgcccagcagccggccgagccggagcaggcc
gccgtggccgagcccgaggacgtcaccgaggcggcggccgagatcgcggcggaggccacc
cagccgaggccggagcccgagccggtcttcgcggccgacgaggagctgtacagcagcgcc
gcggaggccgaggccgccgcgacccgtgggcgtacgcgccgccgtgccacccgtaaggcg
tccgccccggcgggcgcgccgaaggccgccaaggagtcggagggctcggtggtcgtggtg
gccgacgagccgagggaggcgtccaaggcggagccggaggcggtcgccgaggcccccgct
tccgctcccgtcgaggagccggagtcggcggcgccgctggaggccgttcccgcgccgcgt
acgcgtcgtcgggtgacccgtaaggtgaccgcccccgcgggctcgccgacgggctccgag
gaggcggccgtggtggtcgtgagcgcgtcttcggcggagtcggagcccgagccgaaggcg
gaggcggcgcccgagggcgaggccgagtccgaggcgccggcgaagaagaccgcccgtaag
gccgccaagaaggcccccgccaagaagacggcggccaagaagaccgccgagaagaagacg
gcggcgaagaagacggcggccaagaagaccacggcgaagaagacgaccgccaagaagacg
gcgacgaagaagaccgcggcggcggagcagcagactccgcagtcggtctcggccgccgcc
gacgactga
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