Streptomyces violaceusniger: Strvi_9088
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Entry
Strvi_9088 CDS
T01602
Name
(GenBank) RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
svl
Streptomyces violaceusniger
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svl03021
]
Strvi_9088
Transcription machinery [BR:
svl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Strvi_9088
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
GerE
HTH_Crp_2
HTH_3
HTH_AsnC-type
NirdL-like_HTH
MarR_2
DUF7343
HTH_5
MarR
DUF134
HTH_37
Motif
Other DBs
NCBI-ProteinID:
AEM88383
UniProt:
G2PAY4
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All DBs
Position
10495468..10496301
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AA seq
277 aa
AA seq
DB search
MTVSARTAPRTPPQSDGGSESGRSRGADARALTQVLFAELSGLTPGTPEHTRVRAALIEA
NLPLVRYAAARFRSRNEPMEDVIQVGTIGLINAIDRFDPDRGVQFPTFAMPTVVGEIKRY
FRDNVRTVHVPRRLHELWVQVNGATEDLTVLHGRSPTTAEIAERLKLSEEEVLACIEAGR
SYHATSLEAAQEGDGLPGLVDRLGYEDPALAGVEHRDLVRHLLVQLPEREQRILLLRYYS
NLTQSQISAELGVSQMHVSRLLSRSFARLRSANRIES
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtgtcggcccgtaccgcgcccagaaccccgccccagagcgatggcggcagcgaa
agcggcagaagccgcggggctgacgccagagcgctcacccaggtgctcttcgccgagctc
tcgggcctcaccccgggaacccccgagcacacccgtgtgcgcgccgcgctgatcgaggcc
aatctgccgctggtccgctacgccgcggcccgcttccgcagccgcaacgaacccatggag
gacgtgatccaggtcggcaccatcggcctgatcaacgcgatcgaccggttcgacccggac
cgcggggtgcagttcccgacgttcgccatgccgaccgtagtcggcgagatcaagcgctac
ttccgcgacaacgtccgcaccgtccatgtgccgcgccggctgcatgagctgtgggtgcag
gtcaacggcgcgaccgaggacctgaccgtgctgcacggccgctccccgacgacggccgag
atcgccgaacggctcaagctgagcgaggaggaggtgctcgcctgtatcgaggcgggccgc
tcctatcacgccacttcccttgaggccgcccaggagggcgacggactgcccgggctggtc
gaccggctcggttacgaggatccggcgctcgccggagtcgagcaccgcgatctggtgcgc
catctcctcgtacaactgcccgagcgcgagcagcgtatccttttgctgcgttactacagc
aatctgacgcaatctcagatcagcgccgagctcggcgtctcgcagatgcatgtgtcccgg
ctgctgtcccgcagcttcgccaggctgaggtccgcaaatcggatcgagtcctga
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