Shewanella vesiculosa: KDH10_000417
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Entry
KDH10_000417 CDS
T08322
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KDH10_000417 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_000417 (recD)
Enzymes [BR:
svm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KDH10_000417 (recD)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KDH10_000417 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
NAT10_TcmA_helicase
AAA_11
SH3_13
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
UvrD_C
nSTAND3
DEAD
AAA_25
PhoH
NPHP3_N
T2SSE
TraI_hel_assoc_N
AAA_12
NTPase_1
SRP54
AAA_28
MeaB
AAA_29
AAA_24
Motif
Other DBs
NCBI-ProteinID:
UJL43178
LinkDB
All DBs
Position
complement(476570..478618)
Genome browser
AA seq
682 aa
AA seq
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MLILTHPITELLHLWQEQRLITALDRHFALELANIETINNDPAMSEQQPQLFLLVCAMLS
QQLSNQHSCLVIEQIDLANPMAEDNRGNAEINCRIELNHQQLIEQIVLFDAVGQPGDNKP
MIFEHGRLYLNKYHFFETQVAAKLTQLANQQIEIDLANSNLPQLIECLFTAEDSNSSQFN
WQKIATATALAKALAVITGGPGTGKTTTVTKLLLLLLTQSSLTIRLVAPTGKAAARLSES
IKASKHRLLQQLTQVSDPALAKVLTDSLKQIPEEASTLHRLLGVIPNSYQFRHHQDNPLR
LDLLVVDEASMVDLPMMYKLLSALPSHGRLILLGDQDQLASVEAGAVLADICVGLKQANP
QQTSPWSMRYSAAQAKLIEQLTQQDVSQFIHQQPKIGDSLCMLMHSHRFKGDAGIGLLAN
AVNQSNVHAIRQVWQHNHAELNWFEHQHNAQGDNTGKQALLALSVHAYGDYLNLVLQNQQ
AIIDQADRQDSAITLPHAEQTIIDSFNQYRVLCAMRASEFGVEGMNIAITDSLKHAKLIT
PQNEFYLGRPIIIQSNDYNLGLFNGDIGLILQDSTKPSRLMAHFVMADGSLLKVLPARLP
SHDTCYAMTVHKSQGSEFDKVSFVLPHKPSSAQWQLLSKELLYTAITRAKNHFYCLGTAM
IFEKASKQATSRASGLAWRLWG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgctaatactcacccatccaatcactgagttattgcacctttggcaagaacagcggctc
attaccgcactcgatcgtcattttgctttagagctggccaatattgaaaccatcaataac
gatcccgcgatgagcgaacaacagccgcaactgttcttgcttgtttgcgccatgctcagt
cagcaattgtctaatcagcacagttgtttagtcatcgagcaaattgatttagccaatccc
atggcagaggacaaccgcggcaacgctgaaatcaattgtcggattgaacttaaccatcaa
caattgattgaacaaatcgtgctatttgatgccgtcggccagcccggtgacaacaaaccg
atgatttttgaacatgggcgcttatatttaaataaataccacttctttgaaactcaagtg
gcggctaagttgacccagttagccaatcaacaaattgaaatcgacctagctaacagtaat
ctgccgcaactgattgaatgcttatttaccgcagaagacagcaatagcagccagtttaat
tggcaaaaaattgccacggccacagcgttggccaaagcattagcggtgataaccggcggc
ccaggaaccggtaaaaccaccacagtaaccaagctattattgttactgttaacccaatcg
tcgctaacaatccgtttagtcgcgcctacaggtaaagcggcagcaaggctaagtgaatcg
atcaaggcgtctaaacatcgtttactgcaacagctaactcaagtcagcgacccagcattg
gcgaaagtattaacagattcgctaaaacaaataccagaagaagcctcaacattgcatcga
ctattgggggttatcccaaactcatatcaatttaggcaccatcaggataatccgttgcgc
ttagatttactggtggtcgatgaagcgtcgatggtcgacttacccatgatgtataaatta
ctcagcgccctaccgtctcatggccgtttgatattgttaggcgaccaagatcaactcgca
tccgtagaagctggcgcagtgctcgcggatatttgtgttggtttaaaacaagctaacccg
caacaaacatcaccatggtcaatgcgttacagcgccgcacaggcaaagctcattgagcaa
ttaacccaacaagatgtcagtcagtttattcatcaacagcctaaaattggtgacagtttg
tgtatgttgatgcacagccatcgttttaaaggtgatgcaggtattgggttattagccaat
gcggttaatcaatcaaatgtgcatgcgattcgccaagtatggcagcacaatcatgccgaa
ttgaattggtttgaacatcagcataatgcccaaggagataacacaggtaaacaagcatta
ttggcattatcggtacacgcttatggggactaccttaatttggtactacagaatcaacag
gccattatcgatcaagcggatcggcaagacagcgccataacactgccgcatgctgaacaa
accatcatcgacagctttaaccaatatcgagtcttgtgtgccatgcgagcaagtgaattt
ggggttgagggcatgaacatcgccatcaccgacagcctcaaacacgccaaactgattact
cctcaaaatgagttctatttaggccgaccgatcattattcaaagtaacgattacaactta
ggcttatttaatggcgacattggtttaatcttgcaagacagcactaagccaagccgctta
atggcccactttgttatggctgatggcagcctgcttaaagtattgcccgcacgcttaccc
agccacgacacttgctacgccatgacagtccacaaaagccaaggcagcgagtttgataaa
gtcagctttgtattgccacataaacccagctccgcccaatggcaattactcagtaaagaa
ctgctttacaccgccatcacccgcgccaaaaaccatttctattgcttaggcacggcaatg
atatttgaaaaagccagcaaacaagccacatcacgagcatctgggctagcttggagattg
tggggctga
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