Shewanella vesiculosa: KDH10_000699
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Entry
KDH10_000699 CDS
T08322
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03030
DNA replication
svm03430
Mismatch repair
svm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDH10_000699 (holB)
03430 Mismatch repair
KDH10_000699 (holB)
03440 Homologous recombination
KDH10_000699 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svm03032
]
KDH10_000699 (holB)
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_000699 (holB)
Enzymes [BR:
svm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KDH10_000699 (holB)
DNA replication proteins [BR:
svm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KDH10_000699 (holB)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KDH10_000699 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
UJL43410
LinkDB
All DBs
Position
798285..799259
Genome browser
AA seq
324 aa
AA seq
DB search
MSDYQIDQLPWLAEPHQRFVDQHYRGKTSHAHLFNIDKALGGDKLAKAAAQTILCQQLTP
VGACGQCKSCLLLAAGNHPDLYIIEPDGNQIKVDQIRQLCQKLTQTAQQGGARVAIIIDA
ERLNLAAANALLKTLEEPGDDVVLILQTNTSAQLLATITSRCQTLKFIEPTKLDIQHWLA
AQQLLPAANAEGKTHDVTWCLSVVGGPLALANSLTSQHYQQLLTFRQDWAHSLKTGHLSA
SLLKVSEQQIVDALNVLYLYLRQYVLKSSRVKADRQPLNPLVQAKVIDLGGQVMKMCHKL
ETMPSVNTQALCQQYVLAFRKLTN
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattatcagattgaccaattaccttggttagccgagccgcatcagcgctttgtt
gatcaacattatcgcggtaaaactagccatgcccacttgttcaatattgataaagcgctt
gggggggataagctcgctaaagctgcggcacaaacaatactttgccaacaactgacccca
gttggtgcttgtggtcaatgtaaaagctgtttgctattggctgctggtaatcatccagat
ctgtatattattgagccagatggcaaccaaattaaagttgatcaaattcgtcagctatgt
caaaaattaacgcaaacggctcagcaaggtggggcgcgcgtggcgataatcattgatgct
gagcgcttaaatttagccgcagcaaatgcattactcaaaacacttgaagaacctggtgat
gatgttgtgctcattttgcaaaccaatacatcagctcagttactcgcgactattactagc
cgttgccaaactcttaaatttattgaaccgactaagttagatatccaacactggctagct
gcgcagcagctgttgcctgcagccaatgccgagggtaaaactcacgatgtgacttggtgt
cttagtgttgtgggtggtcctttggcgttagcaaacagtttaaccagtcagcattatcaa
caattgctaacatttcgccaagattgggctcacagtttaaaaacgggtcatttaagtgct
agtttactcaaggtgtcggaacaacaaattgttgatgcacttaatgttttgtatttgtac
ttacgtcaatatgtgttaaaaagtagtagagtaaaagcggatcgtcagccattaaatccg
ttagttcaagctaaagtgattgatcttggcgggcaagtgatgaagatgtgtcataagctt
gaaactatgcccagcgtgaatactcaagcattgtgtcaacaatatgttctcgcatttagg
aagctaaccaattaa
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