KEGG   Shewanella vesiculosa: KDH10_000792
Entry
KDH10_000792      CDS       T08322                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
svm  Shewanella vesiculosa
Pathway
svm03030  DNA replication
svm03430  Mismatch repair
svm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:svm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KDH10_000792
   03430 Mismatch repair
    KDH10_000792
   03440 Homologous recombination
    KDH10_000792
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svm03032]
    KDH10_000792
   03400 DNA repair and recombination proteins [BR:svm03400]
    KDH10_000792
Enzymes [BR:svm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     KDH10_000792
DNA replication proteins [BR:svm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     KDH10_000792
DNA repair and recombination proteins [BR:svm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     KDH10_000792
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 CAF1 Oxidored_nitro
Other DBs
NCBI-ProteinID: UJL43488
LinkDB
Position
complement(918928..919644)
AA seq 238 aa
MTNFSDNEILNWAALLKLKAKNSKDRRLHDFYQAGTYCNETPLSDIEFVALDFETTGLDS
QQNSIISIGLVPFNLRRIFCRKAKKWYLNPQDKLQENSIIIHGITHSDLQGAPDLLLILE
QLLDELAGKVVVVHYRHIERDFLDHALRLLINEGIVFPVIDTMQIEANLQRAKSQGILSF
FKPKHKVSIRLANTRERYNLPAYAPHDALTDAIATAELLQAQINYHFSSDTEIRKLWL
NT seq 717 nt   +upstreamnt  +downstreamnt
atgaccaattttagcgataacgaaattttaaactgggcagcgttgcttaaattaaaagca
aaaaacagtaaagatcgacgcttacatgatttttatcaagcgggtacctactgcaatgaa
actccattgagcgacattgaatttgtcgcgcttgattttgaaactactggcctagattcg
cagcaaaatagtattattagtattggtctagtgccgtttaatttacggcgaattttttgc
cgtaaagccaaaaaatggtatctcaatccacaagataaactccaagaaaactcgattatt
atccatggtattacccactccgatttacaaggagcacctgatctgttgcttattttagaa
cagcttttagatgaactggcaggtaaagtggtcgtggtacattatcgccatattgaacgt
gactttctggatcacgctttacgactgttgattaatgaaggcattgtcttcccagtgatt
gataccatgcaaattgaagctaatttacaacgggctaaatctcagggaatattgagtttt
tttaaacccaaacacaaggtgtcaattcgactggctaatactcgagagcgttacaactta
cccgcttatgcacctcatgatgccctaaccgacgcaattgccactgccgagttactacag
gcacaaattaactatcattttagctctgatactgaaattcgaaaattgtggctatag

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