Shewanella vesiculosa: KDH10_001278
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Entry
KDH10_001278 CDS
T08322
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KDH10_001278 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_001278 (sbcB)
Enzymes [BR:
svm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KDH10_001278 (sbcB)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KDH10_001278 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KDH10_001278 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KDH10_001278 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
EF-hand_14
Retrotrans_gag
Motif
Other DBs
NCBI-ProteinID:
UJL43901
LinkDB
All DBs
Position
1503705..1505126
Genome browser
AA seq
473 aa
AA seq
DB search
MNINHDNQPSLFWHDYETFGANPSKDRPSQFAGIRTDLDLNIIGEPETFYCKLAPDYLPA
AEAILITGITPQLANLKGIPEAEFMKRINGLFSQPNTCVVGYNSLRFDDEVSRYGFYRNF
IDPYAREWQNGNSRWDIIDLVRACYAFRPDGINWPMKEDGSPSFKLELLTQANGLSHEKA
HDAMSDVYATIAMAKLIKQKQPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQ
GCTTLIAPVAYHPTNKNAVICVNLAMDISPLLTLSAQEISDRMYTSRQNLAENELAIPLK
QIHLNKCPFIGSPKLLDDEVTEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKP
ITDPDLMLYSGGFFSHADKTKMDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPET
LSDSEARKWRDFCQQRLSNADYVIKLENLVEETSENEHKQKLLKALYQYLQSL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacataaatcatgataatcaaccatccctattttggcacgattacgaaacatttggg
gcgaatccaagtaaagatcgaccatcacaatttgcaggtattcgaaccgatctagatttg
aacattattggtgagcctgaaaccttttattgtaaacttgcaccagattatttacctgct
gccgaagccatactcattacaggtataaccccgcaactggctaaccttaaaggtatacct
gaagctgagtttatgaaacgtatcaatggcttatttagtcaaccaaacacctgtgttgta
ggctacaactcactacgatttgatgatgaagtcagtcgttatggtttttatcgtaacttt
attgacccttatgcacgcgagtggcaaaacggtaattcgagatgggacattattgattta
gttcgtgcttgctatgcatttcgtcccgacggaattaattggcccatgaaagaagatggc
tctccgagttttaagctcgaactactcactcaagccaatggcttaagtcatgaaaaagct
catgatgctatgtcagatgtttatgccaccatcgctatggctaaattaatcaagcaaaaa
cagcctaaactgtatgaatattattttaacttaagacgtaaacaagcggttgcggatcat
attgatgtgctaaaaatgcagccattggttcatgtcagttcaaaaattagtgcgctgcaa
ggctgtaccacattgattgcaccagtggcctatcatccaacgaataaaaatgcagtgatc
tgcgttaatttggcgatggacatttctcccttgttaaccttgtcagcccaagaaatcagc
gatcgtatgtacacctcgcgtcaaaatctggccgaaaacgagctggcgataccacttaaa
caaattcatctgaataagtgcccgtttatcggttcaccaaaattacttgacgatgaggta
acagaaaaattacagtttgataaagcatttgcacgcgagcaatataaacgcctgaaaaat
cacccagaattgcgtgaaaaactgaaccaagtctttgaacttgaatcagaccgtaaaccg
attactgatcctgatttaatgctctacagcggtggttttttcagccatgccgataaaacg
aaaatggacattatttgccatacagcaccccataatttagccgcattagcattgcagttt
gatgatcctcgtatcaatgaaatgttgtttcgctttagggcccgtaattacccagaaaca
ttaagcgacagtgaagctcgtaaatggcgtgatttctgtcaacaacgattatcgaatgct
gattatgtgataaaactcgaaaatctggtcgaagaaaccagcgagaatgaacacaaacaa
aagctattaaaagccctataccaatatttacaatcattatag
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