Shewanella vesiculosa: KDH10_001978
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Entry
KDH10_001978 CDS
T08322
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
svm
Shewanella vesiculosa
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svm03016
]
KDH10_001978 (truB)
Enzymes [BR:
svm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KDH10_001978 (truB)
Transfer RNA biogenesis [BR:
svm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KDH10_001978 (truB)
Prokaryotic type
KDH10_001978 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
UJL44462
LinkDB
All DBs
Position
complement(2314924..2315877)
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AA seq
317 aa
AA seq
DB search
MARRPKGRFIDGIVLLDKDTGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDSDKRYLVTAKLGERTDTSDSDGEVVQTRPVNFTQAQLDEKLAFFRGTTQQ
VPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFIKLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAEYPYEKMVTLAQLEALLEQAHRDDVAPQTLMDPLL
LPMDTAVANFPEINLPEAMLYYVMQGQAIQAAGLKPDELVRITIGDERRFVGMGIMNDDG
LLAPKRLIVIHDNAPAE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgccctaaaggtcgcttcatcgacggaatagtattactcgataaagatact
ggcatgagctctaactttgctctgcaaagagttaagcgcttttttaatgccaataaagcg
ggccacacaggtgctttggatccgctagcaacaggaatgttgcctatttgtcttggagaa
gcgactaagttctctcagcatttattagactcggataaacgttatctggtgacggctaaa
ttgggtgagcgcactgatacgagtgattcagatggcgaagtcgttcagacgcgccctgtt
aattttactcaagcacaactcgatgagaaactggccttttttcgtggcacaacgcaacaa
gtaccatcaatgtattcggcattaaaataccaaggccagcctttgtataagtatgcacgt
gaaggcattgaagtacctcgtgaatctcgaccaatcactgtgtttgagcttaattttatc
aagcttgaaggtgatgagttaaccctagatattcattgttctaaagggacttacatacgg
accattattgatgatttaggtgaaatgttgggatgtggtgcacatgttattatgctgcgt
cgtactcaagttgccgaatatccgtatgaaaaaatggtcaccttagcgcaattagaagcg
ctacttgagcaagctcatagagatgacgttgcgcctcaaactcttatggacccattatta
ttaccaatggacaccgcggtcgctaatttccctgaaattaacctgccagaggcgatgcta
tattatgtcatgcaaggccaggctattcaggctgctggacttaagcctgatgaattagtg
cgtatcactattggtgatgaacgtcggtttgttggtatgggcatcatgaatgatgatggc
ttattagcaccaaagcgtttgattgtgatccatgataatgctccagcagagtaa
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