Shewanella vesiculosa: KDH10_002234
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Entry
KDH10_002234 CDS
T08322
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
svm
Shewanella vesiculosa
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_002234
Enzymes [BR:
svm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
KDH10_002234
DNA repair and recombination proteins [BR:
svm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
KDH10_002234
Prokaryotic type
KDH10_002234
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
DUF3413
Motif
Other DBs
NCBI-ProteinID:
UJL44636
LinkDB
All DBs
Position
2608094..2609629
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AA seq
511 aa
AA seq
DB search
MKQAINIVWFKRDLRLSDHQPLVDAFNHDLPCLLIYDFEPFMLADSHYNQRHWRFVWQSL
QDMNQQLARFNGQVYVFCVPIIDLLDELSQQFEINTMFSHQEIGLHNSFERDKAVALWCH
QQQIHWQQSPTGAVVRGRKHRQAWDQHWQQVMNSPIAIPNWQQCQLQKLDNYHTPLIDQA
IITDNDQFQTGGPKAARAILSSFLSYRGKDYQRSISSPSLSRSHCSRLSPYLAWGNISLK
QVYQATLTRYNAVKTSNKAWKKPLLAMMSRLHWHCHFMQKFESQCSMEFTPVNPGYLDYP
YRSDDNVAQDIQRWAEGQTGIPIIDACMRCLRETGYINFRMRAMLVSFVTHHLNIAWQHA
SLPLANYFLDFEPGIHYPQLQMQASVTGINTIRLYNPIKQSQDQDPRGEFIRLWCPELTN
LPNEYIHQPWLQPPMEAIFNDLILGRDYPEPMIDLTLASQIARDRLWSYRDQPQVKRHIA
AVLGRHVSPKRKRTKGKPIATTTQAKDRHDT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atcaaacaggctattaatatcgtctggtttaaacgcgacttgcgcttgtctgatcatcag
ccgcttgtcgatgcgtttaaccatgatttaccctgcttgctcatttatgattttgaacca
tttatgctggctgactcgcattataatcaacgtcattggcgctttgtgtggcagtcgctg
caagatatgaatcaacaactggcgcgatttaatggtcaggtgtatgtcttttgtgtacca
ataattgatttactggacgagttatcacaacagtttgaaattaacactatgttcagccat
caagagattggtctacacaacagctttgagcgcgataaagcggtggcactctggtgtcat
cagcaacagatccattggcaacaatcaccaacaggtgcggtagttcgaggtcgcaagcat
cgtcaagcctgggatcaacactggcaacaagtgatgaacagccctattgcgatccccaat
tggcaacaatgtcagctgcaaaagctcgacaactatcatactccgcttatcgaccaggcc
atcattacagacaacgatcaattccaaacgggtggtcctaaagcggctagagcaatactg
agcagttttctaagctaccgtggtaaagactaccaacgcagtatttcgagcccgagctta
agtcgcagccactgttcacgcttatcaccttatttagcatggggaaacatcagtttaaag
caagtgtatcaagcgacattaacccgttataacgcggtgaaaaccagcaataaagcgtgg
aaaaagcctttattggcgatgatgtcgcgcctacattggcattgccattttatgcagaaa
tttgaaagccaatgcagcatggaattcaccccggtaaaccctgggtatttagattatcct
tatcgcagcgacgacaacgtagcgcaagatattcagcgctgggctgaaggccaaacgggg
atccccattattgatgcctgcatgcgctgtttacgagagactggttatatcaattttaga
atgcgcgccatgttggtcagttttgtgacccatcatttaaacattgcgtggcaacatgct
agcttaccgttagccaattattttctcgattttgaacctgggatccattacccgcaactg
caaatgcaagcctcggtgacaggcattaacaccatacgcttatacaatcccatcaagcag
tcacaagaccaagatccacgcggggagtttattcgactgtggtgcccagagctcaccaac
ttacccaatgagtatattcatcaaccttggctgcaaccaccaatggaagctattttcaat
gacctaatcttaggccgtgattaccctgaacctatgatagatcttactctggcatcacaa
attgcccgcgatcgcttgtggtcatatcgcgatcaacctcaagttaaacgccatatcgct
gcggtattaggtcgtcatgttagccctaagcgaaaacgaactaagggcaaaccgatagcc
acaacaactcaggctaaagaccgtcatgacacataa
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