Shewanella vesiculosa: KDH10_002364
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Entry
KDH10_002364 CDS
T08322
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_002364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_002364
Enzymes [BR:
svm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDH10_002364
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDH10_002364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Flavi_DEAD
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UJL41407
LinkDB
All DBs
Position
2762993..2764423
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AA seq
476 aa
AA seq
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MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGINLPLKSAVVFGGVSIVPQLAAL
RNGVDILVATPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQ
NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSLALIELIKT
NDWKQVLVFSRTKHGANRLAKSLDAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVAT
DIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIER
LINRVIERKQLAGFEAPFTIPEAGSRSGGSGAKKPNPNRSKHAQQHANDGTQAEKPARNH
DSRQQSRGQDKPVDPKAAARANGNKPPQRNRPPRRSGTAPVTSASSNPYANAKVKS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctcacttggtctgaatgctgctattttaaaagcggttgaaaaacaaggt
tacgacaccccctctccaattcaagcacaagcaataccagcagttttagccggccaagat
gttatggcagcagcacaaacagggacaggaaaaacagctggttttaccctgccaatttta
gaactattatctaaaggtgaacgcgcgcaacgtggtcaagtccgtgcattagtgttaaca
cctacccgcgagcttgccgcacaagtacaagaaagcgtcgcgacttacggcatcaactta
ccgctcaaatcggcggtagtatttggtggtgtgtctatcgtgccacaattagctgcgctc
agaaacggagttgacattttagtggcaacaccaggtcgtttactcgacttatgccagcaa
aaagccattagcttcagcaaattagaaattttggtgttagacgaagcagaccgcatgctc
gacatgggctttattcgcgatattaaaaaggtattggcactattacctgccaaacgccaa
aacttaatgttttcagctacattttcgaatgaaattcgtgagttggcgaaaggtctagtt
aacaatccagtcgaaatttcagtcacgccgcgtaatgccacggcaaacactgtgactcaa
tgtgtgtatccagtagataaaacgcgtaaatcattggcactaattgaactgattaaaacc
aatgattggaaacaagtgttagtgttttctcgtaccaaacacggtgctaaccgtttagcc
aaaagcctggacgctgcgggcattaaagccgctgccatacatggtaataaaagccaaaca
gcacgcactaaagccttggctgattttaaagccggcgcggtgcaagtgatggtcgcgacc
gatattgctgcccgtggtatagatatcgatcaactgccatttgtggttaactttgactta
ccaaacgtacctgaagattatgtgcatcgtattggccgtactggccgtgcaggctcaaca
ggccaagcggtatcattagtcggtcttgaagaagttaagctactgcatgatatcgaacga
ttaattaatcgtgtcattgagcgtaagcaacttgctggttttgaagcgccgtttactatc
ccagaagcaggtagcagatctggcggcagtggagccaaaaagcccaacccgaaccgcagt
aagcatgctcaacaacatgccaatgacggcactcaagctgaaaaacctgcacgtaaccac
gattctcgccagcaatctcgtggacaagataagcctgtagatcctaaagctgcagcaaga
gcaaatggtaataagcctccacagcgtaatcgtccaccacgtcgcagtggtactgcacca
gtcacatctgcaagcagtaatccttatgccaacgctaaagtaaaaagctaa
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