Shewanella vesiculosa: KDH10_002557
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Entry
KDH10_002557 CDS
T08322
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_002557 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svm03021
]
KDH10_002557 (rho)
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_002557 (rho)
Transcription machinery [BR:
svm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KDH10_002557 (rho)
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KDH10_002557 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA
AAA_25
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UJL41576
LinkDB
All DBs
Position
2988371..2989633
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AA seq
420 aa
AA seq
DB search
MNLTELKDTPISDLVSLAESMNLENMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVN
FDKPESSRNKILFENLTPLHAEERLRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQSIAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPEELQKMWILRKILHPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaacagaattaaaagacacgccaatttcagatctagtttcgcttgctgaaagt
atgaatctggaaaacatggctcgtacccgtaaacaagatatcatcttctctattttgaaa
gctcacgctaaaagcggagaagacattttcggtggcggtgtattagaaatcctccaagat
ggatttggatttttaagaagttcagatggctcataccttgcgggtcctgacgatatttat
gtttctccaagccagatccgtcgctttaatatgcgaaccggtgacagcatttttggtaaa
atcagaccgccaaaagaaggcgaaagatacttcgcactattgaaagtcagtgaagttaac
ttcgataaaccagaaagctctcgtaataaaatcctatttgaaaacttaaccccacttcat
gccgaagaacgtcttcgtatggaacgcggtaatggttctactgaagacatcacctcgcga
atccttgatctatgttcaccgatcggtaaaggtcagcgtggtttgattgttgcgccgcct
aaagcgggtaaaacattattacttcaaagcattgctcaaagtattacctacaacaaccca
gatgtggtgttaatggtattactgattgacgaacgtcctgaagaagtgaccgaaatgcaa
cgcatggttaaaggtgaagtgattgcttctacctttgatgaaccagccagccgtcacgtt
caagtagccgaaatggttatcgagaaagcaaaacgtcttgttgagcataaaaaagacgtg
gtgattttgttagactctatcactcgtttagctcgtgcatataacacggttatcccatca
tcaggtaaagtgcttaccggtggtgtcgatgctaacgcactgcatcgtccaaagcgtttc
tttggtgcagcacgtaacatcgaacacggtggcagcttgaccattatcgctaccgcgctt
gttgatacaggctcgaaaatggatgaagtgatttacgaagagtttaaaggtactggtaac
caagagttacacctttctcgtaaagccgctgaaaaacgcgtattcccagcgattgacttc
aaccgctctggtactcgtcgtgaagaaaaactaacgacaccggaagaacttcagaagatg
tggattttacgtaaaatcttacacccaatggatgaagtttcagcaatggaattcttaatc
gataaattggctatgaccaaaactaacgaagaattcttcactgcaatgaagcgcgctaag
taa
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