Shewanella vesiculosa: KDH10_003038
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Entry
KDH10_003038 CDS
T08322
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
svm
Shewanella vesiculosa
Pathway
svm00071
Fatty acid degradation
svm00280
Valine, leucine and isoleucine degradation
svm00310
Lysine degradation
svm00362
Benzoate degradation
svm00380
Tryptophan metabolism
svm00410
beta-Alanine metabolism
svm00640
Propanoate metabolism
svm00650
Butanoate metabolism
svm00907
Pinene, camphor and geraniol degradation
svm00930
Caprolactam degradation
svm01100
Metabolic pathways
svm01110
Biosynthesis of secondary metabolites
svm01120
Microbial metabolism in diverse environments
svm01200
Carbon metabolism
svm01212
Fatty acid metabolism
Module
svm_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
KDH10_003038 (fadB)
00650 Butanoate metabolism
KDH10_003038 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
KDH10_003038 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
KDH10_003038 (fadB)
00310 Lysine degradation
KDH10_003038 (fadB)
00380 Tryptophan metabolism
KDH10_003038 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
KDH10_003038 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
KDH10_003038 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
KDH10_003038 (fadB)
00930 Caprolactam degradation
KDH10_003038 (fadB)
Enzymes [BR:
svm01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
KDH10_003038 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
KDH10_003038 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
KDH10_003038 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
KDH10_003038 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
NAD_Gly3P_dh_N
Motif
Other DBs
NCBI-ProteinID:
UJL41962
LinkDB
All DBs
Position
3514887..3517037
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSPTIQVELLEDNIAKLCFNAQGSVNKFDRETIASLDAALDSIKQNTNIKALLLTSA
KSTFIVGADITEFLTLFQQDDATLLAWVEQANAVFNKLEDLPFPTASAVNGFALGGGCET
ILATDLRVADTNARIGLPETKLGLIPGFGGTVRLPRVIGADNALEWITTAKDQRPEDALK
VGAIDAVVAPENLEAAAIQMLHDALNGSLDWQARRTKKQSALQLPKLEAMMSFATAKGMV
FSVAGKHYPAPMAAVNVVEQAAGLDRDGALKVEAQAFIKLAKTDVAQALIGIFLNDQFVK
GKAKKAAKLAHDVNQAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALELGLNEAAKIL
TTQVARGRSTPEKMAKVLNNITPSLDYAAIKNSDIVVEAVVEHPKVKATVLAEVEQYVSE
DAIIASNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEIIRGEHSSEETIATVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLAEGADFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKNGKDAIDIMFENKRLGQKNTKGFYAYSVDRRGKP
KKDIDPTSYALLGETFGELKAFESDDIIARCMIPMIIETVRCLEEGIIASPAEGDMGLVY
GIGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDTMRELAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatttaccaaagccctaccattcaggttgagttacttgaagataatattgccaaactg
tgttttaacgcacaaggttcggtaaacaaatttgacagagaaaccatagcctcccttgat
gcagcgctagacagcatcaaacaaaacaccaatattaaagctttattgctgacatcagca
aaaagcacgtttattgttggtgctgacatcaccgaattcttaacccttttccaacaagat
gatgcaaccttgctagcttgggttgaacaagctaacgcggtattcaacaaacttgaagat
ttaccgtttccaacagcttctgctgttaatggttttgctcttggtggtggttgtgaaact
attttagcaaccgacttacgcgttgccgataccaatgctcgcatcggtttaccagaaaca
aaattaggccttattcctggttttggtggcacagtgcgtttaccgcgcgtgattggtgca
gataatgcgcttgagtggattaccacagccaaagaccaacgcccagaagatgctttgaaa
gttggcgcgattgatgccgttgtagcccccgaaaacctagaagctgccgcgattcaaatg
ttgcatgatgcacttaatggtagccttgattggcaagctcgtcgcaccaaaaagcaatca
gcacttcagctacctaaacttgaagccatgatgtcttttgcaacggctaaaggcatggtg
ttctctgttgcaggcaagcattatccagcgccaatggctgctgtgaatgttgtcgaacag
gctgctggtttagatcgtgacggcgcgctaaaagtggaagcacaagctttcattaaatta
gcgaaaacagatgttgctcaagcactaattggtattttcttaaatgaccaattcgttaaa
ggcaaagctaagaaagctgctaagttagctcatgatgttaaccaagctgcggtattgggt
gcaggtattatgggcggcggtattgcttaccaaagcgccagcaaaggcacgccaattgtc
atgaaagacatcgctcagccagcattagagttaggcttgaacgaagcggctaaaatcctt
actactcaagttgctcgcggccgctctacgccagagaaaatggctaaagtattaaacaac
attaccccttctttagattatgccgctatcaaaaatagcgatatcgttgtagaagcggtt
gttgaacatccaaaagtaaaagcgactgtacttgcagaagttgagcaatacgtctctgaa
gatgcgattattgcgtcaaacacctcaactatctcaatcaacttactggctaaaagcctg
aagaaaccagaacgtttctgcggtatgcacttctttaacccagtgcacaaaatgccatta
gttgaaattatccgtggtgagcacagctcagaagaaaccatcgcaacagttgttgcttac
gcgagcaaaatgggtaaaaccccgattgttgttaacgattgtccaggtttcttcgttaac
cgcgtattgttcccatactttgctggctttagtggtcttcttgccgaaggcgctgatttc
gccgctatcgataaagtgatggaaaaacagtttggttggccaatgggtccagcttactta
cttgacgtagtcggtttagatactggtcatcacgcccaagcagttatggcagaaggcttc
ccagatcgtatgggtaaaaatggcaaagacgctatcgatattatgtttgaaaacaaacgt
ctaggtcagaaaaacactaaaggtttctatgcctattctgttgaccgtcgtggtaagccg
aagaaagacattgatcctacaagctatgcattattaggcgaaacgtttggtgaattaaaa
gcattcgagtcagatgacatcatcgctcgttgcatgatcccaatgatcatcgaaacggtt
cgttgtttagaagaaggcattattgcatcacctgctgaaggcgatatgggtctagtttac
ggtattggtttccctccattccgtggcggtgtattccgttatttagacaccatgggcgta
gcaaactttgttgccctagcagacaaatacgcacatcttggtggcttatatcaagttacc
gataccatgcgtgaacttgcagccaacaacggtagttactaccaagcctaa
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