Shewanella vesiculosa: KDH10_003173
Help
Entry
KDH10_003173 CDS
T08322
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03030
DNA replication
svm03410
Base excision repair
svm03420
Nucleotide excision repair
svm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDH10_003173 (polA)
03410 Base excision repair
KDH10_003173 (polA)
03420 Nucleotide excision repair
KDH10_003173 (polA)
03440 Homologous recombination
KDH10_003173 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svm03032
]
KDH10_003173 (polA)
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_003173 (polA)
Enzymes [BR:
svm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KDH10_003173 (polA)
DNA replication proteins [BR:
svm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDH10_003173 (polA)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KDH10_003173 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDH10_003173 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WH_GTF3C1_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UJL42070
LinkDB
All DBs
Position
complement(3672118..3674877)
Genome browser
AA seq
919 aa
AA seq
DB search
MPTIPNNPLILVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVVNMLRSLLSRYSPSHIAV
VFDAKGKTFRNDMYGEYKAQRPPMPDDLRTQIEPLHKIIHAMGLPLISISGVEADDVIGT
IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVHPDRIIDFL
ALMGDKSDNIPGLPGVGEKTALAMLLGVGSVEKILADPQSVIEVGFRGSKTMPTKIIDNA
DMLRLSYELATIKTDVKLEQDWHELTVKPQDRDELIKCFGEMEFKRWLAEVLDNKQPRGT
VSDKDSDEDITVSPTIEAEYETILTMEVLDKWIEQLNSAELIAIDTETTSLNYMEAELVG
LSFATEAGKAAYLPLAHDYLDAPQQIDKTSALEKLRPILESDTPQKVGQNLKYDMSILAN
VGITLKGVRFDTMLESYVFNSIASRHDMDGLALKYLGHKNISFEEVAGKGAKQLTFNQVD
LDIAGPYAAEDADITLRLHQHLWPRLEKEPKLASVFDELELPLIQVLSDVERQGVLIDSM
LLSQQSGELAKKLDDLENKAYEIAEEKFNLASPKQLQALFFEKLGYPIKKKTPKGAPSTA
EDVLVELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNAITGRVHTSYHQANAATGRLS
SSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDEGLLTAFAEG
KDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYIDT
YFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERAAINAPMQG
TAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQAAS
LDVTLLAEAGIGDNWDEAH
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgattcccaataacccgctcatcctagttgatggctcatcttatctttatcgc
gcttattattcgccgcctcatttaaccaattcaaaaggtgaagcgactggtgcggtttat
ggcgtcgttaatatgcttcgcagtttattaagtcgctatagtccgagtcatattgcggtg
gttttcgatgccaaaggcaaaaccttccgtaacgatatgtacggcgaatataaagcccag
cgtccacctatgcctgatgatctgcgtactcaaatcgaaccattgcacaaaataatccat
gcgatgggcttaccactgatcagcatttctggtgtcgaagccgacgatgttatcggtacc
atcgccctgcaagcgagtaaagaaggccgagcaaccttaatcagtaccggcgataaagac
atggcgcaactcgtcaatgagcatgtcacgttaatcaatactatgacagacaccattatg
ggaccggaagaggtcaagactaaatacggtgtccatccagatagaatcatcgacttttta
gcactcatgggcgacaagtcagataatattccaggtttacctggcgtcggcgagaaaacc
gcgctggcgatgctgcttggtgtgggaagtgtagagaagattttagcggatccacaaagc
gtcattgaagtgggctttcgaggctcaaaaaccatgccgactaaaattatcgacaatgcc
gatatgctaagactgtcttacgagttggccaccatcaaaactgatgtcaaacttgaacaa
gactggcatgaactcacagttaagccacaagatcgagatgaactgattaaatgctttggt
gaaatggagttcaagcgttggttagcagaagtattagataacaagcaacctcgcggcaca
gttagcgacaaagatagcgatgaagacatcacggtatcaccgaccattgaagcagaatat
gaaacgattctgacgatggaagtactcgacaaatggatcgaacagctcaatagcgctgaa
ctgattgcaattgatactgaaacaactagcctcaattacatggaagctgaacttgtgggt
ttatcatttgccactgaagcaggtaaagcagcttatttaccattagcacatgattacctt
gatgcaccgcaacaaattgataaaaccagcgcacttgaaaaactgcgtcctattcttgaa
agcgatacaccgcagaaagtaggccaaaatctcaaatatgacatgagtattttagccaat
gttggtattaccctaaaaggtgtccgctttgacaccatgctcgaatcctatgtatttaac
tcaatagcatcacgtcatgacatggacggattagcgcttaaatatcttggccataaaaat
atcagttttgaagaagtcgcaggcaaaggcgcaaagcaactgacttttaatcaagttgat
ttagatattgctggaccatatgccgctgaagatgccgatattaccctgcgtttacatcaa
cacttatggccaagactggaaaaagaacccaaactggccagtgtgtttgatgagttagag
ctaccgttaattcaagtactgtcagacgttgaacgccaaggtgtccttatcgactcaatg
ttactgagccaacaaagtggtgagttagccaaaaaactggatgatttagaaaacaaagcc
tacgaaatagccgaagagaagtttaacttagcctcaccaaagcaactacaggcactattt
tttgaaaaactaggttacccaataaagaaaaagactcctaagggtgcaccatcaactgct
gaagacgtattagtcgagctagcacttgattatcctttacctaaagttattctcgagcat
cgcagcctagcaaaactaaaaagtacttataccgataaactgccgctaatggttaatgcc
ataactggcagggttcacactagctatcatcaagcgaatgccgcaacaggccgcttgtca
tcaagtgagccgaacttacaaaatattcctatccgtaccgaagaaggccgccgtattcgc
caagcctttatcgctcctgcgggtcgaaaaattttagctgccgattattcacaaatcgaa
ctgcgtatcatggctcatttatctcaagatgaaggcttactgaccgcttttgctgaaggt
aaagatattcataaagccactgcagccgaagtatttggggtgcattttgaagaagtcacg
accgagcaacgtcgccgcgccaaagcggttaactttggtttaatttatggcatgtctgca
tttggtttagctaagcaattagatattccacgcaacgaagcacaaacctacatagacacg
tattttgctcgctatcctggtgtgcttaagtatatggaagaaacccgcgccattgctgct
gaattgggttatgtttcgaccttatttggccgtcgtttatatttacctgaaatcaacgat
cgcaatgccatgcgccgccaagccgcagagcgagcagcgattaatgctcccatgcaaggg
actgcagcagacataataaaaaaagccatgattgctatccaccagtggattaaccaagat
actcaaggtgaaattaccctgatcatgcaagtacacgatgaattagtgtttgaagtggat
gaagctcaagcagaaacactcaaaaccaaagtgtgcgatttaatggcacaagcagcatca
ttagatgtgaccttgttagcagaggcaggtattggcgacaattgggatgaagcccactaa
DBGET
integrated database retrieval system
